KEGG   Rhodoferax koreense: RD110_12715
Entry
RD110_12715       CDS       T04721                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
rhy  Rhodoferax koreense
Pathway
rhy03030  DNA replication
rhy03430  Mismatch repair
rhy03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rhy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RD110_12715
   03430 Mismatch repair
    RD110_12715
   03440 Homologous recombination
    RD110_12715
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhy03032]
    RD110_12715
   03400 DNA repair and recombination proteins [BR:rhy03400]
    RD110_12715
Enzymes [BR:rhy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RD110_12715
DNA replication proteins [BR:rhy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RD110_12715
DNA repair and recombination proteins [BR:rhy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RD110_12715
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon HHH_3
Other DBs
NCBI-ProteinID: APW37945
UniProt: A0A1P8JW25
Position
2706194..2709730
AA seq 1178 aa
MFVHLRLHTEFSVVDGTNRIDDVIQAAKRDQQPALAITDLSNLFGAIKFYKEARGKGIKP
VIGAEIFLEGLGKEAGALSRVVVLVQNKQGYLNLSELLARGFTQNVVKAQAVIKLVWLQE
LGDGLICLSGAQAGPVGQALVQGDEARAADVALQLASVFPHRFYLELQRAGRPDDETQVA
GAVQLAARLKLPVVATHPVQFTEEADYEAHEARVCISEGEILGNPRRVRRFTREQYFKSA
AQMEALFADVPSAIANTAEIAKRCSLTLVLGKPQLPDFPTPEVNGERMTPENYFRYASHE
GLKERLLHLYPDEAEREAQRPRYVERLEFEIGTILKMGFPGYFLIVGDFINWAKNNGCPV
GPGRGSGAGSLVAYALKITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQGNRDRVIDYV
KDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGMSYTLAYPPE
VKKDGDKNNYALELEPLLYERVRAEEDVRTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLT
DFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKEFIVKRHKGQENFA
FENIPLDDKPTYRLFQEGKTEAVFQFESRGMQGMLKDAKPTRLEDLIALNALYRPGPMDL
IPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAM
GKKKAEEMAEHREKFRAGALATHGIEQAKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHT
GWLKVHYAAEFYCANMTVEMDNTDKLKLLYEDAVKMGLTFEPPDVNRGRYRFEPVTDKVI
RYGLGAVKGTGQQAIDAIVAAREEGGPFKSLFDFCLRVDRARLNKRTVEALIKAGAFDAL
HLNRAELVASIDRAFAFAAAAAANAGQGGLFDMMDDGHGSSTEEPGLVETTPWGVKEQLT
LEKTAVGFYLSGHLFDEVKAEVRQFAKRQVADVVDGRDPVLLAGIVSELRVINGQRGKLG
LFRFDDGTGMLDARVSEAVMNANKNLFREDELIIVMGKVQVDRFGGGGLQLTVVEAWDLA
TARCRFGKFLRVTVAPGEKAAAPDIARVVKEFPPKREMSDHGDILRGLMVRLQVQRRTDR
GAAGAELQLGEEARFFPTDEALASWQIGTGRAEIVYEA
NT seq 3537 nt   +upstreamnt  +downstreamnt
atgttcgttcaccttcgcctccacaccgagttttccgtcgtcgacggcaccaaccgcatc
gacgacgtcattcaagccgccaagcgggaccagcagcccgcgctggccatcaccgacctc
agcaacctgttcggcgccatcaagttctacaaggaagcgcgcggcaagggcatcaagccg
gtcatcggcgcggaaatctttctcgagggcctgggcaaggaggccggcgccctgtcgcgg
gtggtggtgctggtgcagaacaagcagggctacctgaacctgtccgagttgctggcgcgc
ggcttcacgcagaacgtggtcaaggcgcaggcggtcatcaagctggtgtggctgcaagaa
ctcggcgacgggctgatctgcctgtccggcgcacaggccgggccggtgggccaggcgctg
gtgcagggcgacgaggcgcgggccgccgacgtggcgctgcagctggcctcggtgtttccg
caccgcttctacctggagctgcagcgcgcgggccggcccgacgacgagacccaggtggcc
ggcgccgtgcagctcgcggcccggctcaagctgcctgtggtcgccacgcaccccgtgcag
ttcacggaggaggcggactacgaggcccacgaggcgcgcgtgtgcatctccgaaggcgag
atcctcggcaatccgcggcgcgtgcgtcgcttcacgcgcgagcagtacttcaagtcggcc
gcgcagatggaggccttgttcgccgacgtgccctcggccatcgccaacaccgccgagatc
gccaagcgctgcagcctgacgctggtgctgggcaagccgcagctgcccgacttcccgacg
cccgaggtcaacggcgagcgcatgacgccggagaactacttccgctacgcctcgcacgag
gggctgaaggagcggctgctccacctctatcccgatgaggccgaacgcgaggcacagcgc
ccgcgctacgtggagcggctggagttcgagatcggcaccatcctgaagatgggtttcccc
ggctacttcctgatcgtgggcgacttcatcaactgggccaagaacaacggttgcccggta
ggcccgggccgcggctcgggcgccggctcgctggtggcctatgcgctgaagatcaccgac
ctcgacccgctgcagtacaagctgctgttcgaacgtttcctaaatccggagcgtgtgtcg
atgcccgacttcgacatcgacttctgccagggcaaccgcgaccgcgtgatcgactacgtg
aaggacaaatacggcaagaacgccgtgagccagatcgccaccttcggcaccatggccgcc
aaggccgcgatccgcgacgtgggccgcgtgatggacatgagctacaccttctgcgacggc
atctccaagctggtgcccggcaagcctgggatgtcgtacacgctggcctatccgcccgag
gtgaagaaggacggcgacaagaacaactacgcgctcgagctcgagcccctgctctacgaa
cgcgtgcgcgccgaggaggatgtgcgcaccgtcatcgaaatggcgcagaagctcgaaggc
atgacgcgcaacatcggcatgcatgccggcggcgtgctgatcgcgccgggcaagctcacc
gacttctgtccgctgtaccagcagcccggcagcgaatcggcggtgagccagtacgacaag
gacgacgtggaggccatcggcctggtgaagttcgactttctgggcctggccacgctgacc
atcctcgagatcgccaaggagttcatcgtcaagcggcacaagggccaggagaacttcgcg
ttcgagaacatcccgctggacgacaagccgacctaccggctgttccaggaaggcaagacc
gaagccgtgttccagttcgaaagccgcggcatgcagggcatgctgaaggacgccaagccc
acgcggctggaggacctgatcgcgctcaacgccctgtaccgtccggggccgatggacctg
atcccgagcttcgtggcgcgcaagcacggccgcgaggaggtggagtatccgcacccggcg
gtggccgagatgctgagcgagacctacggcatcatggtctaccaggagcaggtgatgcag
accgcgcagatcctgggcggctacagcctgggcggcgccgacctgctgcgccgcgccatg
ggcaagaagaaggccgaggagatggccgagcaccgcgagaagttccgcgccggcgccctg
gccacgcatggcatcgaacaggccaaggccgacgagattttcgacctgatggagaagttc
gcgggctacggcttcaacaagtcgcacgccgccgcctattcgctcctggcctaccacacc
ggctggctcaaggtgcactacgccgccgagttctactgcgccaacatgacggtggaaatg
gacaacaccgacaagctcaagctgctctatgaagacgcggtgaagatgggactgacgttc
gagccacccgacgtgaaccgcggccgctaccgcttcgagccggtgaccgacaaggtgatc
cgctacgggctgggcgcggtcaagggcacgggccagcaggccatcgatgccatcgtcgcc
gcgcgggaagagggcgggcctttcaagagcctgttcgacttctgcctgcgggtggaccgc
gccaggctcaacaagcgcacggtggaagccctgatcaaggccggcgccttcgacgcgctg
catctgaaccgcgccgaactcgtggcctcgatcgaccgcgcgttcgcctttgccgccgcc
gcggcggccaacgcggggcagggcggactgttcgacatgatggacgatggccacggatca
agcaccgaggagccaggcctggtcgagaccacgccgtggggcgtgaaggagcagctgacg
ctggagaagaccgcggtcggcttctacctgtcgggccatctgttcgatgaagtgaaggcc
gaggtgcggcagttcgccaagcggcaggtggccgacgtggtggacgggcgcgacccggtg
ctgctggccggcatcgtcagcgaactgcgcgtgatcaacgggcaacgcggcaagctcggc
ctgttccgcttcgacgacggcaccggcatgctcgacgcccgcgtgtccgaggcggtcatg
aacgccaacaagaacctgttcagggaggacgagctgatcatcgtcatgggcaaggtgcag
gtcgaccgcttcggcggcggcgggctgcagctcaccgtggtcgaggcctgggacctggcg
acggcgcgctgccggttcggcaagttcctgcgcgtgacggtggcgcccggcgagaaggct
gcggcgcccgacatcgcgcgcgtggtcaaggaattcccgccgaagcgggagatgtccgac
cacggcgacatcctgcgcggcctgatggtgcggctgcaggtgcagcgccgcacggaccgc
ggcgcggcgggcgcggaactccagctcggcgaggaggcgcggttctttccgaccgatgag
gcgttggccagctggcagatcggcacggggcgggcggagatcgtgtacgaggcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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