KEGG   Rhodoplanes sp. Z2-YC6860: RHPLAN_02430
Entry
RHPLAN_02430      CDS       T04290                                 
Name
(GenBank) Transcription termination factor A33M
  KO
K03628  transcription termination factor Rho
Organism
rhz  Rhodoplanes sp. Z2-YC6860
Pathway
rhz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RHPLAN_02430
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhz03021]
    RHPLAN_02430
   03019 Messenger RNA biogenesis [BR:rhz03019]
    RHPLAN_02430
Transcription machinery [BR:rhz03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RHPLAN_02430
Messenger RNA biogenesis [BR:rhz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RHPLAN_02430
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB Spore_III_AA NACHT AAA_22 AAA_25 AAA DUF6360
Other DBs
NCBI-ProteinID: AMN38708
UniProt: A0A127EN35
Position
complement(279747..281012)
AA seq 421 aa
MREMKLQDLKSKTPPELLAFAEEQEIENASTMRKQELMFAILKQLATKEIDIIGEGVVEV
LSDGFGFLRSPEANYLPGPDDIYVSPSQIRRFGLRTGDTVDGQIRSPKDGERYFALLKVN
TINFEDPDKARHKINFDNLTPLYPEQRLKMEHEDATKKDLSARVIDIVAPIGKGQRALIV
SPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAS
RHVAVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELILDRKVADKRTFPA
IDITRSGTRKEELLTEAQQLKKMYVLRRILNPMGTMDAIDFLLDKLRSTKSNAEFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatgaaactccaagaccttaaatccaaaaccccccctgagcttctggcgttt
gccgaggagcaggaaatcgagaacgccagcaccatgcgcaagcaggagctgatgttcgcc
atcctcaagcaactcgccaccaaagagatcgatatcatcggcgaaggcgtcgtcgaggtg
ctctccgacggcttcggcttcctgcgctcaccggaggcgaactacctccccggccctgac
gacatttacgtttcgccctcgcagatccgccgcttcggcctcaggactggcgacacggtc
gacggccagatccgttcgccaaaggacggcgagcgttatttcgcgctgctgaaggtcaac
acgatcaacttcgaagaccccgacaaggcgcgccacaagatcaacttcgacaacctgacg
ccgctctatccagagcagcgcttgaagatggagcacgaggacgcgaccaagaaggacctc
tcggcccgcgtcatcgacatcgtcgcgccgatcggcaaaggccagcgcgcgctgatcgtg
tcgccgccccgcaccggcaagacggtgctgctgcagaacatcgctcactcgatcaccgcg
aaccatcccgagtgctatctgatcgttctgctgatcgatgagcgcccggaagaagtcacc
gacatgcaacgctcggtgaagggcgaggtggtgtcctccaccttcgacgagccggcctcg
cgtcacgtcgccgtggccgaaatggtgatcgagaaggccaagcgcctcgttgaacacggc
cgggacgtcgtcatcctgctcgattcgatcacgcgtctgggccgtgcctacaacaccgtg
gtgccgtcatccggcaaggtgctgaccggcggcgtcgacgccaacgctctgcagcggccg
aagcgcttcttcggcgccgcgcgcaacatcgaagaaggtggctcgctgaccatcatcgcc
acggccctgatcgacaccggcagccgcatggacgaggtgatcttcgaagagttcaagggc
accggtaactcggagctcatcctcgaccgcaaggtcgccgacaagcgcaccttcccggcg
atcgacatcacccggtcgggcacgcgcaaggaagagctgctcacggaagcgcagcaactc
aagaagatgtacgtcctgcgccgcatcctgaacccgatgggaaccatggatgcgatcgac
ttcctgctcgacaagctgcgcagcacgaagagcaacgccgaattcttcgagtcgatgaac
acctga

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