KEGG T00402: pRL120212

Rhizobium leguminosarum bv. viciae 3841: pRL120212

Entry

pRL120212 CDS T00402

Definition

DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rle Rhizobium leguminosarum bv. viciae 3841

Pathway

rle03410	Base excision repair
rle03420	Nucleotide excision repair
rle03430	Mismatch repair
rle03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rle03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rle03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rle03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rle03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

GeneDB:

RhizoBase:

UniProt:

Position

pRL12:220723..221769

AA seq 348 aa
MKRPRRPLPLLDESHSTLQSRPIRKRDPDQPSLPFDPMPSRVEPCLALLKPTVPVGPDWL
YEVKLDGYRLAIHVEPKGVRVITRGGHDWTHRFPTIAAAAKELGVATAILDGEAVVLDDH
GRSDFGALQRSLGGRGGKRVSTESILVAFDLLYLDGHDLTGTELEVRRHLLEDLIPEGDD
RAIRLSEEIELPAEELLEHACHHHLEGIIAKHRDRPYGSGRTGDWLKIKCVQSESFMVVG
YEQSASARGGIGRLLLAGRRGLDWIYVGSVGTGFGASDAEYLKKTLDRLKTSRPVVPLKG
NRLVLVQPTLIAEIEFRGWTDDGNLRHASYKGLREVQDNAAVFEMTYI

NT seq 1047 nt +upstreamnt +downstreamnt
atgaagcgcccgcgccgcccactgcccttgctcgacgaatctcactcaacgctgcagtct
cgtccgatccgcaagcgcgatcctgaccagcccagtctgcccttcgatcctatgccgtcg
cgcgtcgagccctgccttgcactgctgaagccgactgtgcccgtcgggccggattggctc
tacgaggtgaagctggatggctatcgattggcaatccacgttgagccgaagggcgtgcgg
gtcatcacccgcggcggccatgactggacccaccgcttccccaccatcgccgcggcagcc
aaagagcttggcgtagcaaccgccattctcgatggcgaggccgttgtactcgatgatcac
ggccgctcggattttggcgccctgcagcgttcgctcggcgggcggggcggcaagcgagta
tcgaccgagtcgatcctcgtcgccttcgaccttctctatctcgatggacacgatctgacc
ggcaccgagcttgaggtacgccggcatctgcttgaagacctgataccggaaggcgatgat
cgagcgatccgactctccgaggagatagagctgccggcagaagaactcctcgagcacgcc
tgccatcatcatctggaaggcatcatcgccaagcatcgcgaccggccctacggcagtggc
cgcacgggcgactggctgaagatcaaatgcgtgcagagcgagagcttcatggtcgtcggt
tatgagcagtccgcatccgcccgcggcggcatcggcaggctgctgctggccggcagacga
ggcctcgactggatctacgttggctccgtcggaaccggtttcggtgccagcgatgctgaa
tacctgaaaaagacgctagaccggttgaagacgagccggccggtcgttccgctgaagggc
aatcgcctcgtcctcgtgcagccgacgctgattgccgagatcgagtttcgcggctggacg
gatgacggcaatctccgccatgcctcgtacaaggggctgcgcgaggttcaggacaacgcc
gctgtcttcgaaatgacctacatctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   GENEDB-RLE (1)   
   OC (1)   
   RHIZOBASE-RLE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

Download RDF

DBGET integrated database retrieval system