KEGG   Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_1393
Entry
Rleg_1393         CDS       T00926                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
rlg  Rhizobium leguminosarum bv. trifolii WSM1325
Pathway
rlg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rlg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Rleg_1393
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rlg03019]
    Rleg_1393
   03009 Ribosome biogenesis [BR:rlg03009]
    Rleg_1393
Enzymes [BR:rlg01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Rleg_1393
Messenger RNA biogenesis [BR:rlg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Rleg_1393
Ribosome biogenesis [BR:rlg03009]
 Prokaryotic type
  rRNA processing factors
   Rleg_1393
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: ACS55685
UniProt: C6AUW0
Position
complement(1383909..1386770)
AA seq 953 aa
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSKQDQP
DVGIAPEAAAVTEETAAVEAAASPEAAEEAPAKKARPRRSRKKAAEPVAETTATEDAVPT
DVEAEGASSVDNEDDGSTGGAMAAMVETDSISEDVDTSKRRHDDDDDDDDHGEEEVIESV
GAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYS
VLMPNTARGGGISRKITNPADRKRLKEIARLLEVPQGMGVILRTAGANRTKVEVKRDFEY
LMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKM
LMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSG
RSTREHSIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECL
KNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGI
EEYLLKNTTHNITVRTTPDIALYLLNHKRQTIIDYESRFGVAIIIDADGSVGAQHFAIDR
GEPVENPVKIETLFNFAAIPEDDDDDIVIEVDEEEDEELEEKPAVSERPVAARAESEADG
NRKRKRRRRRRGRNGNAEQPLSATGEAGDEDEDGDDEGGEGDENTEATPETRAESEESQR
RKRRRRGKRGGRRNRAEDGSELTAGEAGEDNGGDEDEGDDVSNDGAPSEAVAVEAIAEQA
DEGQAAMAAVESAPVITEEVKPARARGRRKPAAAPVEEPVAETAPAVEAEPELVEASADL
ETSVQEEAKPVRANRESNISSSEPTVKSTRVENVEGDDGKPKKAGWWQRRGFF
NT seq 2862 nt   +upstreamnt  +downstreamnt
atggcagacaaaatgcttatcgatgcgtctcacgaggaagagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagaatttgacttcgagtcccagcacaagaagcagatccgcggc
aacatctatcttgcaaaggtgacgagggtcgaaccctcgctgcaagccgccttcgtcgat
tacggcggcaaccggcacggtttcctggccttcgccgaaatccatcccgactattatcag
ataccgcttgccgaccgtcaggcgctgcttcgggccgaagccgaggagcatcgccgcgac
gaagacgtcgagcatgtcgaaaccgcgccgatggtcgatctttccaagcaggatcagccg
gatgtcggcatcgcgccggaagcggctgccgtaacggaagagaccgcagcggtagaggcc
gcagcatcgcccgaggccgccgaggaagcgccggccaagaaggcaaggccgcgtcgcagc
cgcaagaaggcagccgaaccggttgccgaaacgaccgcgaccgaggacgctgttcccaca
gacgtcgaagccgaaggcgcgtcgagcgtcgacaatgaggatgacggttcgaccggcggc
gcgatggccgcgatggtggaaaccgactcgatctccgaggacgtcgataccagcaagcgt
cgccacgatgacgacgacgatgatgacgatcacggtgaagaagaagtcatcgaatccgtc
ggcgccgaagacgcgatggaagaagtgccggaccgcgtgcagcgcaagccgcgcaagcag
taccgcatccaggaagtcatcaagcgccgccagatcctgctcgtgcaggtcgccaaggaa
gagcgcggcaacaagggtgcagcccttaccacctatctctcgctcgccggccgctattcg
gttttgatgccgaacacggcgcgcggcggcggcatttcccgcaagatcaccaatcctgcc
gaccgcaagcgcctgaaggaaatcgcgcgcctgctcgaggtgccgcagggcatgggcgtc
atccttcgcaccgccggtgccaaccgcaccaaggtggaggtcaagcgcgacttcgaatat
ctgatgcgcctttgggagaacgtgcgcacgctgacgctggcgtccaccgctccctgcctc
gtctacgaggaaggctcgctgatcaagcgttcgatccgcgacctctacaacaaggatatc
agcgaagtcatcgtttccggcgaagaaggctatcgtgaagcgaaagacttcatgaaaatg
ctgatgccgagccatgccaaggtggttcagccctatcgcgacatccatccgatcttttcg
cgttccggcatcgaggctcagctcgaccgcatgctgcagccgcaggtgacgctgaagtcc
ggcggctatctgatcatgaaccagaccgaagcgctggtttcgatcgacgtcaactccggc
cgctcgacccgcgaacattcgatcgaagacaccgcgctgcagacgaatctggaggctgca
gacgaagtcgcccgccagcttcgccttcgcgaccttgccggcctgatcgtcatcgacttc
atcgacatggaagagaagcgcaacaaccgcgccgtcgagaagaagctgaaggaatgcctg
aagaacgaccgtgcccgcatccaggtcggccggatctcgcatttcggcctgctcgaaatg
tcgcgccagcgcatccgcgcttcggttctcgaatcgacgacgcaggtctgctcgcattgc
ggcggcagcggccatgtgcgttcgcagtcctccgtcgccctgcatgtcctgcgcggcatc
gaggaatatctgctcaagaacaccacgcacaacatcaccgtgcgcaccacgcctgacatc
gcgctctacctgctcaaccacaagcgccagacgatcatcgattatgagagccgcttcggc
gttgcgatcatcatcgatgcggacggctcggtcggcgcgcaacatttcgcgatcgatcgc
ggcgagccggtggaaaacccggtcaagattgaaaccctcttcaacttcgcagccattccc
gaggatgacgacgacgacatcgtcatcgaagtggatgaggaggaagacgaggaactcgag
gaaaagccggccgtttccgagcggcccgtcgcggcccgcgcggaaagcgaagccgacggc
aatcgcaagcgcaagcgccgcaggcgccgccgcggccgcaacggcaatgccgaacagccg
ctatcagcgacaggcgaagccggcgacgaggatgaggacggcgacgacgagggtggcgaa
ggtgatgaaaacaccgaagccacgcccgagacacgtgccgaaagcgaggaatcgcagcgc
cgcaagcggcgccgtcgcggcaagcggggcggccgtcgcaatcgcgccgaggatggttcg
gaactgacggctggcgaagccggtgaagacaatggcggcgacgaggacgaaggcgacgac
gtttcgaacgacggcgctccgagcgaagccgtagcggtcgaggcgattgccgaacaggcc
gacgaaggccaggccgcgatggcagccgtcgagagcgcgcctgtcataaccgaagaggtg
aagcccgcccgtgcccgcggccgccgcaaaccggccgcagcgccggttgaggaaccggtt
gcagagacggcccctgcggtcgaggccgaacccgaactggtagaagcctccgccgatctc
gaaacatcggttcaggaagaggcaaagccggttcgcgccaaccgcgaatccaacatctcc
tcctccgagccgacggtgaaatccacccgcgtcgagaatgtcgaaggcgatgacggcaag
ccgaagaaagccggctggtggcagcgccgtggcttcttctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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