KEGG T00779: Rleg2

Rhizobium leguminosarum bv. trifolii WSM2304: Rleg2_5705

Entry

Rleg2_5705 CDS T00779

Gene name

ligD

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rlt Rhizobium leguminosarum bv. trifolii WSM2304

Pathway

rlt03410	Base excision repair
rlt03420	Nucleotide excision repair
rlt03430	Mismatch repair
rlt03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rlt03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rlt03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rlt03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rlt03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

pRLG202:103682..106333

AA seq 883 aa
MASDNLSTYRSKRDFKKTAEPSGEKQIARSNRRRFIIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHHDAFSVEENGAAVLEEN
DTSVASGRTMDAIATGKGRKPKPFMIKGGDIKADAVWDSNQGLAAEERKEEGRAGRTPKT
AAKVDLPDFIAPQLCQTLERPPAGEGWIHEIKFDGYRIQMRILDGEVTLKTRKGLDWTGK
YPEVAEAASALPDAIIDGEICALDDHGVPDFAALQAALSEGRTGDLVYFAFDLLYEGGED
LRSLPVIERKARLQSLLADAGDDPRLRFVEHFETGGDAVLRSACKLSLEGIVSKQSDAPY
QSGRTDSWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAKKVE
TLLPKLQALETAKSPFTGIGAPKKEAEVTWVKPKLVAEIEFAGWTADGIVRQAAFKGLRE
DKPAREVKAERPAKPAETDVPEPEPAAEVKARPARRKGAKAEVMGVMISNPDKPLWPDAN
DRKPVTKEELARYYEAVGGWMIAHIEGRPCSIIRAPDGLGGEQFFQRHAMPGTSNLLELV
KVFGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCQPHKPEVPGRLVFDLDPGPDVPFSTV
VSAAREMHDRLDALGLVSFCKTTGGKGLHVVTPLAINKRKPLSWAEAKSFAHDVCQQMAR
DNPDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLD
PKRFTIRTVPALLSKSSAWEDYSDGQRPLEQAIKRLSKVSNAA

NT seq 2652 nt +upstreamnt +downstreamnt
atggccagtgacaacctctcgacataccgatcgaagcgcgactttaaaaaaacggcggag
ccgagcggcgagaagcagatcgcgcgcagcaatcgccgtcgtttcatcatccagaaacat
gacgccacccggctgcattacgacctgcggctcgagctcgacggcgtcttcaaatcctgg
gctgtcaccaaaggcccttcgctcgatccgcacgacaagcggctggccgtcgaggtcgaa
gatcacccgctcgattatggtgattttgaaggcacgatcccgaaagggcaatatggcggc
ggcacggtgatgttgtgggaccgcggctattgggagcctgagggaaagaagagcccggag
caggcgcttgccaagggcgacttcaagttcaccctcgaaggcgaaaggctgcacggcagc
ttcgtcctggtgcgcatgcgcaatgaccgcgacggcggcaagcgaaccaactggctgctg
atcaagcaccacgacgcgttctcggttgaggagaatggcgcagccgtcctggaggagaac
gacacctccgtcgcctccggccggacgatggatgcgatcgccacgggcaagggccgcaag
ccgaagccgttcatgatcaagggcggggatatcaaggcggatgcggtctgggacagcaac
caggggctggccgccgaagagaggaaagaggagggtcgagccggcaggacgccgaaaacg
gcggcaaaggtcgacctcccggatttcatcgcgccacagctttgccagaccctggagcgg
ccgccggccggcgagggctggattcacgagatcaagttcgacggctaccgtatccagatg
cgcatactcgacggcgaggtaacgctgaagacccgcaaagggcttgactggaccggcaaa
tatccagaggtcgccgaggcggcatcggcgctgcccgacgccatcatcgacggcgagatc
tgcgctctcgacgaccatggcgtaccggatttcgcagccctgcaggccgccctttcggaa
ggccggaccggcgatctcgtctatttcgccttcgatcttctttacgagggtggcgaggac
ttgcgatccttgcctgtgatcgagcgcaaggcgcggcttcagagcctgcttgcggatgcc
ggtgacgaccctcggctccgtttcgtcgagcatttcgagaccggcggcgatgcggtcctt
cgctccgcctgcaagctctccctggaaggcatcgtctccaagcagagcgatgcgccctat
caatccggccgcaccgacagctgggccaagtcgaaatgccgcgccggccacgaagtggtg
atcggcgcctatgccaagaccaacggcaaattccgatcgctgctggtcggcgtctaccgc
ggcgaccacttcgtctatgtcggccgcgtcggcacgggatatggcgccaagaaagtggaa
acgttgcttccgaaactgcaagcgctcgagacggcaaaatcgcccttcaccggcatcggt
gcgccgaagaaggaggccgaggtcacttgggtgaagcccaagctcgtggcggaaatcgag
ttcgccggctggaccgccgacggcatcgtccgccaggcggccttcaagggcctgcgggag
gacaagcccgccagggaggtcaaggccgaacggccggccaagccagcggagaccgacgtg
ccggagccggagccggcggcggaggtgaaggcgaggccagcccgccgaaagggcgccaaa
gccgaggtcatgggcgtgatgatctccaatccggacaagccgctttggccggatgccaat
gaccgcaaaccggtgaccaaggaggagctggcccgctattatgaagccgtcggcggctgg
atgatcgcgcatatcgaggggcgcccctgttcgatcatccgtgcgcccgatgggctgggc
ggcgagcagttcttccagcgccatgcaatgcccggcacctcgaaccttctcgaactggtc
aaggtcttcggcgataaaaagccctatctgcagatcgaccgggtcgagggcctagcggct
gtcgcgcagatcggcgccgtcgagttgcacccctggaattgccaaccgcacaagccggag
gtgccgggccggctggtgttcgacctcgaccctggccccgacgtgccgttctcgacagtc
gtttccgccgcccgcgagatgcacgatcggctcgacgcgctcggtctcgtcagtttctgc
aagaccacaggcggcaagggcctgcacgtcgtcacgccgcttgcgatcaataagcgcaag
ccgctttcctgggcagaggcgaagagttttgcgcacgacgtctgccagcagatggcgcgc
gacaatcccgatctctatctgatcaagatgaccaagagcctcaggaacggccgtatcttc
ctcgactatctccgcaacgaccggatggcgacggccgtggcgccattgtcgccccgtgcc
cggccgggcgccaccgtctcgatgccgctgacctggacccaggtcaaatccgatctcgac
ccgaaacgctttaccatccgcaccgtgccggcactgctgtcgaaatcgtcggcctgggaa
gattatagcgatggccagcgcccgctggagcaggcgatcaaacggctgagcaaagtctcg
aacgcggcgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RLT (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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