KEGG   Rhodothermus marinus SG0.5JP17-172: Rhom172_1020Help
Entry
Rhom172_1020      CDS       T01606                                 

Definition
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
rmg  Rhodothermus marinus SG0.5JP17-172
Brite
Transcription machinery [BR:rmg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Rhom172_1020
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_ECF Sigma70_r2 HTH_24 GerE HTH_23 HTH_38 DUF2774 Trp_repressor HTH_AsnC-type RepL HTH_20 HTH_Tnp_ISL3 HTH_11 HTH_10 TnsD 2_5_RNA_ligase2 HTH_40
Motif
Other DBs
NCBI-ProteinID: AEN72950
UniProt: G2SG50
Position
1167759..1168322
Genome map
AA seq 187 aa AA seqDB search
MRPGASISEQQELAARVRQGDAVAFERLFRAYYTPLVHFAVHIVGTLPEAEEVVQRVFVN
IWRNRAAWAPHVSVAAYLYGAVRNEAVKYSQRRPPAVPLEEAAEMVCDRPHPDQQLVGND
LTELIERLIQELPEQRRLIFTLSRDHGLTYAEIAQSLGISIKTVETQMGRALRQLRERLQ
AWLNVAP
NT seq 564 nt NT seq  +upstreamnt  +downstreamnt
atgaggccgggcgcttctatttctgagcagcaggagctggcggcaagggtacgccagggc
gatgcggtagccttcgagcggctgtttcgggcctactacacgccgctggtgcactttgcc
gtgcacatcgtgggcacgctcccggaggccgaggaagtggtgcagcgcgtgttcgtcaac
atctggcgcaaccgggccgcctgggcgccccacgtctcggtagcggcctatctctacggc
gccgtgcgcaacgaagccgtcaaatacagccagcggcgtccgcccgccgtaccgctggaa
gaagcggccgagatggtctgcgaccgcccccacccggaccagcaactggtcggcaacgac
ctgaccgaactgatcgaacggctcatccaggagctgcccgagcagcgacggctgatcttc
accctctcgcgcgatcacgggctcacctacgccgaaattgcgcagtccctgggcatctcg
atcaagaccgtggaaacgcagatggggcgcgccctgcgtcagcttcgggagcgcctccag
gcgtggctgaacgttgcgccctga

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