KEGG   Rothia mucilaginosa: RMDY18_00020
Entry
RMDY18_00020      CDS       T01144                                 
Name
(GenBank) DNA polymerase sliding clamp subunit
  KO
K02338  DNA polymerase III subunit beta [EC:2.7.7.7]
Organism
rmu  Rothia mucilaginosa
Pathway
rmu03030  DNA replication
rmu03430  Mismatch repair
rmu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rmu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RMDY18_00020
   03430 Mismatch repair
    RMDY18_00020
   03440 Homologous recombination
    RMDY18_00020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rmu03032]
    RMDY18_00020
   03400 DNA repair and recombination proteins [BR:rmu03400]
    RMDY18_00020
Enzymes [BR:rmu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RMDY18_00020
DNA replication proteins [BR:rmu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RMDY18_00020
DNA repair and recombination proteins [BR:rmu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RMDY18_00020
SSDB
Motif
Pfam: DNA_pol3_beta DNA_pol3_beta_2 DNA_pol3_beta_3
Other DBs
NCBI-ProteinID: BAI63834
UniProt: D2NQA8
Position
2479..3621
AA seq 380 aa
MKGAFSMKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLITASAGEVSIASFDHETSAR
QVIAADVEAEGVCLVPGKILAEICRSLPNAPVEFTADESVIRIHCRSANFQLAGMPVVDY
PELPELPEISGTVDGAEFAEAVKQVQIAVSKDETLPLLTGIRVEINGDTMTLLATDRYRL
AMREIKWNPTNPDVQAAVLLKAKTVSEVGSTLSGSGNLSIALPAAGELIGFAAGTRRTTS
VLMDGDYPNIRALFPEQTPIHAVVRTSDLAEAARRISLVAERNTPLRLKFTQGSVAIDAG
RGDEAQASETLQAHLSGDDITVAYNPAYLSDGLKVFGTEFVRFSFTDAPKPAVISGQDEP
LAEDDRNYRYLLMPVRLPSN
NT seq 1143 nt   +upstreamnt  +downstreamnt
gtgaaaggcgccttctcgatgaaattcaccgttgaacgcgatgtccttgccgaagcagtc
ggctggacggcacgctcacttccgctgcgtcccacctcccccgtactcaacggtctgctg
attaccgcctccgcaggtgaggtcagcatcgcaagcttcgatcacgagaccagcgcccgc
caggtcattgcagccgatgttgaagcagaaggcgtgtgcctggttcccggcaagatcctg
gcagaaatttgccgctccctaccgaacgcacccgtcgagttcaccgcagatgagtccgtg
attcgtattcactgccgttccgctaacttccagctcgctggcatgccggtcgtggactac
cccgagcttcccgagcttcccgaaatttccggtaccgtggacggcgccgaattcgctgaa
gccgtcaagcaggttcagattgcggtgtccaaggatgagaccctgccgctgctgaccggt
atccgcgtcgaaatcaacggcgacaccatgaccctgctcgccaccgaccgctaccgcctg
gcaatgcgcgaaatcaagtggaacccgaccaaccctgacgttcaggcggctgtgctgctg
aaggctaagaccgtctctgaggtcggtagcaccctctccggttccggcaatctgtctatc
gccctgcccgcagcgggtgagctgatcggcttcgcagcgggtacccgccgcaccaccagc
gttctgatggacggcgactaccccaacatccgtgcgctgttccccgaacagaccccgatt
cacgcggtggttcgcacctccgacctggctgaggctgctcgccgtatctccctcgtggcg
gaacgcaacactcccctgcgtctgaagttcactcagggttcggttgctattgatgccggc
cgcggtgatgaggctcaggcatccgagactctgcaggcgcacctgtccggtgatgacatc
accgttgcgtacaaccccgcctacctctcggatggtttgaaggtttttggtaccgagttc
gttcgtttctccttcaccgatgcgccgaagcctgccgtaatttccggtcaggatgagcct
ctggctgaggatgaccgcaactaccgttacctgctgatgccggttcgcctgccgtcgaac
tag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (24)   

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