KEGG R.norvegicus: 24932

Rattus norvegicus (rat): 24932

Entry

24932 CDS R.norvegicus

Gene name Cd4

Definition Cd4 molecule

Orthology K06454 CD4 antigen

Pathway rno04514 Cell adhesion molecules (CAMs)
rno04612 Antigen processing and presentation
rno04640 Hematopoietic cell lineage
rno04660 T cell receptor signaling pathway
rno05340 Primary immunodeficiency

Class Environmental Information Processing; Signaling Molecules and
Interaction; Cell adhesion molecules (CAMs) [PATH:rno04514]
Organismal Systems; Immune System; Hematopoietic cell lineage
[PATH:rno04640]
Organismal Systems; Immune System; Antigen processing and
presentation [PATH:rno04612]
Organismal Systems; Immune System; T cell receptor signaling pathway
[PATH:rno04660]
Human Diseases; Immune System Diseases; Primary immunodeficiency
[PATH:rno05340]

SSDB

Motif Pfam: CD4-extracel C2-set Tcell_CD4_Cterm V-set ig I-set
Receptor_2B4
PROSITE: IG_LIKE

Other DBs NCBI-GI: 6978631
NCBI-GeneID: 24932
RGD: 2306
RATMAP: ENSRNOG00000016294
Ensembl: ENSRNOG00000016294
UniProt: P05540

Structure

PDB: 1CID

Position 4q42

AA seq 457 aa
MCRGFSFRHLLPLLLLQLSKLLVVTQGKTVVLGKEGGSAELPCESTSRRSASFAWKSSDQ
KTILGYKNKLLIKGSLELYSRFDSRKNAWERGSFPLIINKLRMEDSQTYVCELENKKEEV
ELWVFRVTFNPGTRLLQGQSLTLILDSNPKVSDPPIECKHKSSNIVKDSKAFSTHSLRIQ
DSGIWNCTVTLNQKKHSFDMKLSVLGFASTSITAYKSEGESAEFSFPLNLGEESLQGELR
WKAEKAPSSQSWITFSLKNQKVSVQKSTSNPKFQLSETLPLTLQIPQVSLQFAGSGNLTL
TLDRGILYQEVNLVVMKVTQPDSNTLTCEVMGPTSPKMRLILKQENQEARVSRQEKVIQV
QAPEAGVWQCLLSEGEEVKMDSKIQVLSKGLNQTMFLAVVLGSAFSFLVFTGLCILFCVR
CRHQQRQAARMSQIKRLLSEKKTCQCSHRMQKSHNLI

NT seq 1374 nt +upstreamnt +downstreamnt
atgtgccgaggcttctctttcaggcacttgctgccgctgctgctcctgcagctgtcaaaa
ctcctagttgtcacccaaggaaagaccgtggtgctggggaaggaagggggttcagcagaa
ctgccctgtgaaagtacctcgaggaggagtgcatccttcgcgtggaagtcctctgaccaa
aagacaattctgggatataagaacaagttattgattaaaggttcacttgagctgtatagt
cgttttgattccagaaaaaatgcatgggagagaggatcatttcccctcatcatcaataaa
cttaggatggaggactctcagacttatgtctgcgagctggagaacaagaaagaggaggtg
gagttgtgggtcttcagagtgaccttcaatccgggtaccagactgttgcaggggcagagc
ctgaccctgatcttggatagcaaccctaaggtctctgaccccccgatagagtgcaaacac
aaaagcagtaacattgtcaaggactccaaagctttctccacgcacagcctaaggattcag
gacagtggcatctggaactgcaccgtgaccctgaaccagaagaagcactcatttgacatg
aaactctcagtgctgggctttgcgagcacatccatcacggcctataagagtgagggggag
tcagcggagttctccttcccactcaaccttggagaggaaagcctgcagggagagttgaga
tggaaggcagagaaggctccttcttcccagtcctggatcaccttctccctaaagaaccaa
aaggtgtctgtgcagaagtctactagcaaccccaagttccagctgtccgaaacgctccca
ctcacccttcagataccccaggtctcccttcagtttgctggttctggcaacctgaccctg
actctggacagagggatactgtatcaggaagtgaacctggtggtgatgaaagtgactcag
cccgacagcaacactttgacctgtgaggtgatgggacccacctcacccaagatgagactg
atcttgaagcaggagaatcaggaggccagggtctccaggcaggagaaagtgattcaagtg
caggcccctgaagcaggggtgtggcaatgtctactgagtgaaggtgaagaggtcaagatg
gactccaagatccaggttttatccaaagggttgaaccagacaatgttcctggctgtcgtg
ctggggagcgccttcagctttctggttttcacggggctctgcatcctattctgtgtcagg
tgccggcaccaacagcgccaggcagcacggatgtctcagatcaagaggcttctcagtgag
aagaagacttgccagtgctcccaccggatgcagaaaagccacaatctcatatga

All links

Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (4)   
   UNIGENE (1)   
   ENSEMBL-RNO (1)   
   RATMAP-RNO (1)   
   RGD-RNO (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (1)   
   IPI (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (8)   
   Pfam (7)   
   PROSITE (1)   
All databases (31)

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