KEGG T01003: 25683

Rattus norvegicus (rat): 25683

Entry

25683 CDS T01003

Gene name

Col12a1

Definition

collagen, type XII, alpha 1

Orthology

K08132

collagen, type XII, alpha

Organism

rno Rattus norvegicus (rat)

Pathway

rno04974

Protein digestion and absorption

Class

Organismal Systems; Digestive system; Protein digestion and absorption [PATH:rno04974]

SSDB

Motif

Pfam:

fn3 VWA VWA_2 Interfer-bind Collagen VWA_3 vWA-TerF-like Tissue_fac Toxin_R_bind_N

Other DBs

NCBI-GI:

293349337

NCBI-GeneID:

25683

RGD:

2374

Position

8q31

AA seq 3064 aa
MQTGLPRALAALGVALLLSSIEAEVDPPSDLNFKIIDENTVHMSWERPADPIVGYRITVD
STTDGPTKEFTLAASTTETLLSNLIPETQYVVTITSYDEVEESVPVIGQLTIETGDPAKP
GEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIVALVSAFDIGEEKTRVG
VVQYSSDTRTEFNLNQYYRREDLLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGSRAG
FPKVAIIITDGKSQDEVEIPARELRNIGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVIEPPSNLVVTDLSSKFIRLRWDPSPSA
VTGYKILLTPMAAGSRHHALSVGPQTTTLNVRDLSADTEYQISVFAMKGLTSSEPVSVME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLAKSFEISPNRVQIS
LVQYSRDPHTEFTLKEFNRVEDIIKAINNFPYRGGSTNTGKAMTYVREKIFVPNKGSRSN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLRFTQVTANSFKAEWSPAGDNVF
SYHITYKDTTGDDEVTVVEPASSTSVVLSNLKPETLYLVNVTAEYEDGFSVPVVGEETTA
EVKGAPRNLKVTDETTDSFKITWSQAPGRVLRYRIMYRPVSGGESKEVSTPANQRRKTLE
NLTPDTKYEISVIAEYSSGPGSPLTGSAATEEVRGNPRDLRVSDATTSTLKLTWSGAPGK
VKQYLVTYTPAAGGETQEVTVRGDTTTTVLRNLKEGTQYDLSVTALYASGAGEALSGKGT
TLEERGSPQNLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDIEAGEKTLPGDAIHT
MIENLQPETKYKISVFATYSSGEGEPVTGDATTELSQDSKILKVDEETEHTMRVTWKAAP
GKVINYRVVYRPQGGGRQMVAKVPPTVTSTVLKRLQPQTTYDITVLPMYKTGEGKLRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVLGPYDN
TVVLEELRAGTTYRVNVFGMFDGGESLPLVGQEMTTLSDTTVTPFLSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFEIGPKRVQIALAQYSGDPRTEWHLNAHRDKK
SLLQAVANLPYKGGNTLTGMALNFIRQQSFKTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAIGIKNADEVELKMIATDPDDIHAYNVADFESLSKIVDDLTINLCNSVK
GPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRLETSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDIGPTTMHVQWQPVGGA
TGYTVSYQPTRSPEGTKPKEMRVGPTVNDVQLTGLLPNTEYEVTVQAVLHDLTSEPAKAR
EATLPLPRPQDVKIRDVTHSTMNVIWEPVLGKVRKYTVRYKTPEEEFKEVEVDRSRTSTT
LKDLSSQTQYTVSVSAVYDEGTSPPATAHETTRPVPAPTNLQFTEVTPESFRGTWDHGAS
DVSLYRITWAPVGNPDKLETILNGDENTLLFENLDPNTLYDVSITAIYPDESESEDLSGS
ERTLRLIPLTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQT
TTVGGRQNSVVLQKLKPDSPYTITVSSQYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTS
TLSVRWDHAEGNPRQYKLFYAPAGGPEELVPIPGNTNYAILRNLQPDTPYTVTVVPVYAE
GDGGRTSDTGRTLVRGLARNVQVYNPTPNSLDVRWDSAPGPVQQYRIVYSPVAGTRPSES
IVVPGNTRTVHLERLIPDTPYSVNIVALYSDGEGNPSPGQGRTLPRSGPRNLRVFGETTN
SLSVAWDHADGPVQQYRIIYSPIVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAIY
EDGDGGHLTGNGRTVGLLPPQNMHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEPM
EAFVGEVTSYTLHNLNPSTTYDVSVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQVGWDT
FCVKWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPEAEYGVTVFVQTPNL
EGPGVPIKEQTTVKPTEAPTEPPTPSPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNF
NKVVKFIFNTVGAFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGG
NTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAAFIIQQSGFSVFVVG
VADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLVYLDGYTSP
GFKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRLQKNAFINQPTAELHPNGLPPSYTI
ILLFRLLPETPSDPFAIWQITDRDYRPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDADE
AKTLFYGSFHKVHIVVTSKSVKIYIDCYEIVEKDIKEAGNITTDGYEILGKLLKGERKSA
TFQIQSFDIICSPVWTSRDRCCDIPSRRDEAKCPALPNACTCTQDSVGPPGPPGPAGGPG
AKGPRGERGINGAVGPPGPRGDTGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGL
PGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGTPGSPGVTGPSGKPGKPGD
HGRPGQSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMSRFNQMLNQIPNDYHSNRN
QPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPQGERGLPGEKGERGIGSQGPRGP
PGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQGY
PGSG

NT seq 9195 nt +upstreamnt +downstreamnt
atgcagaccgggcttccccgagcgctggccgccctgggcgtggccctactcctgtcttct
attgaggcagaagttgacccaccttccgacttgaattttaaaattatagatgaaaatact
gtccatatgtcatgggagagaccagctgatccaattgtgggttacagaataacagtggac
tctacaacagatgggcctactaaagaatttacccttgcagctagtaccactgaaacccta
ttatcaaaccttattcctgaaacacagtacgtggtcaccatcacttcctacgatgaagta
gaagaaagtgtgccggttataggccaactaacaattgaaacaggtgatccagcaaaacca
ggggagaagaaacctggaaaaacagagatacaaaagtgctctgtcagcgcctggaccgac
ttagtgtttcttgtggatggctcctggagtgtgggaagaaataatttcaagtacatttta
gacttcattgttgctcttgtgtctgcctttgacattggggaggagaagacaagggtggga
gttgttcagtacagctcagacaccaggactgaatttaacttaaatcagtattaccgaaga
gaagacctgcttgctgcaattaaaaaaataccatacaaaggtggcaacacaatgacaggg
gatgccattgactacttagtcaaaaacactttcactgagtctgctggctcaagagctggc
tttcctaaagtggcgatcattatcacggatggcaagtctcaggatgaagtagaaattcca
gcacgggaacttcggaatattggagttgaggttttctctctgggcattaaagctgcagat
gcaaaagaactcaaacaaattgcatccacaccttccctgaaccacgtgttcaatgtggcc
aattttgatgcaatcgtggacattcagaatgagataatctcccaggtgtgttcaggagtt
gatgagcaacttggtgagctggtcagtggagaagaagtcatcgagcctccttcaaatctg
gtagtcacagatctctcatcaaaattcattaggctgagatgggatccgtctcccagcgct
gtgactggctataagatcctcctcacaccaatggctgccgggagccgccatcacgctttg
agtgtggggccccagacgaccacgctcaatgttcgtgacctttcagctgacacagaatac
cagatcagcgtttttgccatgaaggggctaacatccagtgagcctgtttcagtcatggag
aagacacagccaatgaaagttcaagtagaatgttcacgtggtgtggatataaaagccgac
atcgtgtttttggttgatggttcctacagcatcggcattgcaaactttgttaaagttaga
gcctttttggaagttcttgcaaaaagttttgagatttctccaaacagggtgcagataagc
cttgtccagtacagcagagaccctcacactgaatttacattgaaggagtttaacagagtt
gaagacataatcaaagcaataaataacttcccgtacaggggaggatccacaaacacaggc
aaagcaatgacttacgtcagagagaaaatatttgtgcctaacaaaggctccagaagcaac
gtaccaaaggtgatgattctcatcacagatgggaagtcgtcagatgctttcagggaccct
gctataaaactcaggaactcggacgtggagatcttcgcagttggtgtaaaggatgctgtg
cgctcagaactggaagccattgcctctcctcccgctgagacacatgtgttcacagtggag
gacttcgatgcctttcagaggatatcgtttgaactcacacagtctatctgtcttagaatt
gagcaagagttggcagctataaagaagaaagcttatgtgccgccaaaggatctgagattt
actcaggtaactgctaatagtttcaaagctgaatggtctcctgctggagacaacgtcttc
tcgtatcacatcacgtacaaggacactactggtgacgatgaggtcacagtggtggagcca
gcctccagcaccagtgttgttctcagcaacctgaaaccagagaccctgtacttggtgaat
gtgacggcagagtatgaggatggcttcagcgtccctgtagttggggaggagaccacggct
gaagtaaaaggagcaccacgaaacctgaaggtgactgatgagacgacggacagttttaaa
attacctggtctcaagctccagggagagtcttaaggtaccgaattatgtacagaccagtt
tctggtggagaaagtaaagaagtcagtactccagccaaccagaggaggaaaacactggag
aacctgacgccagacacaaagtatgaaatatctgtaattgctgaatattcatccggacct
ggctctccactgacaggaagtgcagccactgaagaagttagagggaatccaagagactta
agagtttctgatgccacgacatcaacgctgaagttgacttggagtggggccccaggaaaa
gtgaagcagtatcttgtcacatacaccccagcagcaggaggtgaaactcaggaggtcact
gtgagaggggatacaaccaccacggtgttgaggaacttgaaggaagggacacagtacgac
ttatctgtgacagcactgtatgcgtctggggctggtgaggccctttctggaaaagggaca
acacttgaagaacgtggttcacctcaaaatctagttaccaaagacatcacagacacatca
atcggggcctattggacatctgctccagggatggttcgagggtacagggtctcatggaag
tcgctttatgacgatattgaggccggagagaaaactcttcctggagatgcaattcacact
atgattgagaatctgcagccagagaccaagtacaaaatttcagtttttgcaacttacagc
agtggagaaggagagccggtgactggagatgccacaactgaattatctcaagactccaaa
atcttaaaagtggatgaagaaacagaacacacaatgagagttacctggaaagcagcgccg
gggaaagtcatcaactaccgcgttgtgtatcgccctcaagggggtgggagacagatggtt
gctaaggttccacccacggtcacttcaacagtgctaaagaggcttcaaccccagaccaca
tatgacatcacagttctcccaatgtataagacaggagaaggaaagcttagacaaggatca
ggaacaacagcttctcgatttaaatcgccgagaaacctcaaaacttctgacccaacaatg
tcaagtttccgagtgacttgggagcctgcccctggggaagtgaaaggttacaaagtcacc
tttcaccctacaggtgacgacagaagacttggggagttggtccttggaccatatgacaac
acagttgtcttggaggagcttagggcaggcactacatatagagtcaatgtttttgggatg
ttcgatggaggagaaagtttaccacttgttgggcaggaaatgacaaccctttctgacaca
actgtgacaccatttctatcttccgggatggaatgtctcaccagagctgaagcagacatt
gtgttgctggtggatgggtcatggagcattggccgcgcaaattttagaactgtgcgaagc
ttcatctctcgtatcgtggaagtctttgaaatcggccccaagagagtacaaattgctctc
gctcagtacagtggagaccccagaacagagtggcacctaaacgctcatagagacaagaag
agtttgttacaggctgtggcgaacttgccgtataagggaggaaacaccctcacaggcatg
gctttgaatttcattcgccaacagagcttcaagactcaagctggcatgcggcctcgtgct
cgcaaaattggagttctcattaccgatggaaaatcacaggatgatgtggaggctccatcc
aagaagctcaaggatgaaggtgtagagctgtttgctatcggtattaagaatgctgacgaa
gttgagttaaagatgattgccactgatccagatgacattcacgcatacaatgtggcagat
tttgagtcattgtccaagattgtggatgacctcaccatcaacttgtgtaacagtgtcaag
ggccctggtgacttggaagcaccatctaacttagttatttcagagagaactcatcgttct
tttagagtgagctggacacccccttctgacagtgtggacagatacaaggtggaatactat
cctgtctctggagggaaacgccaggagttttacgtgagtcgactagaaactagcacagtg
ttgaaggatctgaagcccgagactgagtatgtggtgaacgtgtattctgtggttgaagat
gagtacagtgagcctctgaagggcacagagaaaaccttgccagtccctgtagttagcctg
aatatttatgatattggccccaccactatgcatgtgcaatggcagcctgtgggaggagct
actggctacactgtatcataccaacctacaagatctccagaaggaacaaagcccaaagag
atgcgtgtggggcccacagtgaatgatgtgcagctgaccggcctccttcctaacacagag
tatgaggtcaccgtccaggcagtcttgcatgacctcactagtgaacctgccaaagctcgg
gaagccacattgcccttacccagaccccaggatgtgaaaatcagagatgtgacccacagt
accatgaatgtcatctgggagcctgtgcttggaaaagttcgcaaatacactgttagatat
aaaactccagaagaggagttcaaagaggtggaggtggacagatcaaggaccagcactacc
ctcaaagacctctcctctcaaacccagtacacagtgagcgtttccgcagtgtatgatgag
ggcacatctcccccggcgactgctcatgagacaacccggcctgttccagccccaaccaac
ctacagtttactgaagtaactccggagagttttaggggaacctgggatcacggtgcttca
gatgtgtctctctacagaataacctgggcacctgtcggaaacccagataagctggagacc
atcttaaatggagatgaaaataccttgctgtttgaaaatctggaccccaacactctgtat
gatgtctccatcactgccatttatcccgatgagtctgaaagcgaggacctgagtggcagc
gagcgcacattgcgtctgatacccttaacgacacaagctccaaaaagtggtccacggaac
ctgcaggtgtacaatgccacatctaacagtttgactgttaagtgggaccctgctagtggt
cgtgtgcaaaaatacagaatcacctatcagccttcaactggagaaggcaatgagcaaacg
accacagtaggaggacggcagaacagcgtggtcctgcagaaactgaagcccgacagtccg
tacaccatcaccgtgtcatcccagtatcctgatggtgaaggcggccggatgactggaagg
ggcaaaactaaacctctgaataccgtgaggaatttgagagtgtatgacccatctaccagc
actttgagtgttcgctgggaccatgcagaaggcaatcctcgccagtacaaactcttctat
gccccagccggtggtccagaagaactggtaccaatccctgggaataccaactatgccatt
cttaggaacctgcagccagatactccatacactgtcacagtggttcctgtctatgcagaa
ggtgacggcgggcgcacatcagatactggaaggacactggtgagaggactggcgagaaat
gtccaagtgtataaccctacgcccaacagcctcgatgtccgctgggactctgccccaggg
ccagtgcagcagtaccgcattgtgtactccccagtggctgggacaagaccctcagaatct
attgtggtgccagggaatacccgcacggtgcatctggagaggttgattcctgacacaccc
tactctgtgaacatcgtggctctctactcagatggagaggggaatcccagccctggccag
ggccgaacactgccacggagtggaccaagaaatctacgagtctttggggagacgaccaac
agcctctctgtagcctgggaccatgctgacgggccagttcagcaatacaggatcatctat
tctcctatcgtgggcgatccaattgatgaatataccacagttccaggcaggagaaacaat
gtaatactgcagcccctgcaacctgacactccatataaaattactgtcattgccatttat
gaggatggagatggtggccatctaactggaaacgggaggactgtgggtctgcttccgcct
cagaacatgcacatctctgacgaatggtacacaaggttccgagtgtcctgggacccttca
ccctcaccagtccttggatataaaattgtgtacaagccagtgggttccaatgagcccatg
gaagcctttgttggagaagtgacgtcatacactttacacaacctcaatcccagcactacc
tatgatgtcagtgtttatgcacagtatgactctggactcagcgttcccctcacagatcaa
ggcaccacgttgtacttaaatgtgacagatctgaaaacttaccaggttggatgggacacc
ttctgtgtcaaatggtcacctcaccgggcagcgacctcttacaggctaaagctgagtcct
gccgatggaaccaggggacaagaaataacagtgagaggatcagagaccagtcactgcttc
actggcctctccccggaggctgagtatggcgttactgtttttgtgcagacaccaaatctc
gaggggccgggtgtccccatcaaagaacagacgactgtgaaaccaacagaggctcccaca
gaaccgcccacgccttcacctcctcccactatcccacctgcccgtgatgtatgcaaaggg
gccaaggcagatattgtgttcctgacggatgcctcttggagtattggagatgacaatttt
aacaaagttgtaaaatttatttttaatactgtgggggcctttgatgaaatcagccctgct
gggattcaggtttcttttgtgcagtacagtgatgaggtcaagtctgaattcaagctgaac
acatacaacgataaggctctagcccttggagccctccagaacattcggtacagaggagga
aacacaagaacaggcaaggccctcacgtttatcaaggagaaggtcttgacctgggaaagt
ggcatgaggaagaatgtcccgaaggtgctagttgtggtcacagatggccggtcacaggat
gaggtgaagaaggcagcctttatcatccagcagtcagggttcagtgtattcgttgttggt
gtggctgatgtggactacaatgagctcgccaacattgccagcaagcccagtgagaggcac
gtgttcattgtggacgactttgaatcttttgagaagatcgaggacaatcttatcacattt
gtttgtgaaactgccacttcaagttgtcctctcgtctatctggatggctacacatcacca
ggctttaagatgcttgaagcttacaacctgacagaaaagaactttgcttctgtccaagga
gtctctttggaatcagggtctttccccagctattcagcctacaggcttcagaagaatgcc
tttatcaatcagcccacagcagaactccatccgaatggactccccccttcatatacgatt
atattattgtttagacttctcccagaaactcctagtgacccctttgcaatttggcaaatt
acagacagagactacagaccacaagttggagtgattgcagatccttctagcaagacactg
tctttctttaataaggatacaagaggcgaggtacagactgttacatttgatgcagatgaa
gcgaagaccttgttttatggaagctttcataaggtccatattgtagtgacctcaaagagt
gttaagatttatattgactgctatgaaattgtagaaaaagacatcaaagaagctggaaat
ataacaactgatggctatgaaattcttggaaaacttcttaaaggagagaggaaatcagcc
acattccaaatccagagctttgacattatctgcagcccagtgtggaccagtagagacaga
tgctgtgatattccctctcggagagatgaagcaaaatgccccgcccttccgaatgcttgc
acatgcacacaggacagcgttggccctccaggtcctccaggccctgcgggaggacctggt
gccaaaggtcccagaggtgaaagaggcatcaatggggcagttgggcccccaggtcctcgt
ggagatactgggcctccaggacctcagggtcctccaggccctcagggacccaatggactc
tccattccaggagaacagggtcgccagggaatgaaaggtgatgcaggagagccagggctt
ccaggccggacaggaaccccaggattacctggcccgccaggaccaatggggccaccagga
gacagaggtttcactggaaaagatggtgcaatgggaccgagaggcccacctgggccaccg
ggaaccccaggctctccaggagtcacagggccaagtgggaaaccgggaaaacctggagat
catggccgacctggtcaatctgggttaaaaggagaaaaaggtgataggggagacattgct
tcccagaacatgatgcgagctgttgcaagacaagtgtgtgaacaactgatcagtggccag
atgagcagattcaaccagatgctgaatcagattccaaacgattaccactcaaatcgaaac
cagcctggcccaccaggacctccagggccccctggcagtgctggagccagaggagaacca
gggccggggggacgaccaggattccctggcacgcctgggatgcaaggacctcagggcgaa
cgaggtttgcctggagagaaaggtgaaaggggtattgggtcgcaaggaccccgaggacct
ccagggcccccaggtccacaaggtgaatccagaacaggtccaccagggtctacaggttca
agaggccctcctggtccccctggtcgtccaggaaactcaggtatccgaggacccccaggt
cctcctggatattgtgattcatcccagtgtgccagcattccatacaacgggcaaggctat
ccaggttccggctaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (3)   
   UniGene (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

Download RDF

DBGET integrated database retrieval system