KEGG T01003: 29220

Rattus norvegicus (rat): 29220

Entry

29220 CDS T01003

Gene name

Thbs4

Definition

thrombospondin 4

Orthology

K04659

thrombospondin 2/3/4/5

Organism

rno Rattus norvegicus (rat)

Pathway

rno04145	Phagosome
rno04151	PI3K-Akt signaling pathway
rno04510	Focal adhesion
rno04512	ECM-receptor interaction
rno05144	Malaria

Class

Environmental Information Processing; Signal transduction; PI3K-Akt signaling pathway [PATH:rno04151]
Environmental Information Processing; Signaling molecules and interaction; ECM-receptor interaction [PATH:rno04512]
Cellular Processes; Transport and catabolism; Phagosome [PATH:rno04145]
Cellular Processes; Cell communication; Focal adhesion [PATH:rno04510]
Human Diseases; Infectious diseases; Malaria [PATH:rno05144]

SSDB

Motif

Pfam:

TSP_C TSP_3 COMP EGF_CA EGF_3 EGF EGF_MSP1_1

Other DBs

NCBI-GI:

NCBI-GeneID:

RGD:

Ensembl:

Position

2q12

AA seq 961 aa
MLAPRAAAFLLLHLVLQPWQRAGAQATPQVFDLLPSSSQRLNPAALQPVLTDPTLHELYV
ISTFKLQSKSSATIFGLYSSSDNSKYFEFTVMGRLNKAILRYLKDDGKIHLVVFNNLQLA
DGRRHRILLRLSNLQRGAGSVELYLDCVQVDSVNNLPRAFSGLTQNPQAIELRTFQRKPQ
DFLEELKLVVRGSLFQVASLQDCFLQQSEPLAATGTGDFNRQFLGQMTQLNQLLGEVKDL
LRQQVKETSFLRNTIAECQACGPLSFQSPTPNTLVPIAPPAPPTRPTRRCDSSPCFRGVR
CTDTRDGFQCGPCPDGYTGNGITCSDVDECKYHPCYPGVRCTNLAPGFRCDACPVGFTGP
MVQGVGINFAKTNKQVCTDVDECRNGACVLNSICINTLGSYRCGPCKPGYTGDQTRGCRT
ERSCRNPEQNPCSVHAQCIEERQGDVTCVCGVGWAGDGYVCGKDVDIDSYPDEELPCSAR
NCKKDNCKYVPNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLTHNVDQRNTDKDIFG
DACDNCRGVLNNDQKDTDGDGKGDACDDDMDGDGIKNILDNCPRVPNRDQQDRDGDGVGD
ACDSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQLDTDKDGIG
DECDDDDDNDGIPDLVPPGPDNCRLVPNPAQEDSNNDGVGDICEADFDQDKVIDRIDVCP
ENAEITLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVD
FEGTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVK
SKTGPGEHLRNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYE
GSELVADSGVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFQIQTFDRLD
N

NT seq 2886 nt +upstreamnt +downstreamnt
atgctagccccacgcgcggccgccttcctcctactgcacctggtcctgcagccgtggcag
cgggcgggcgcccaggccacaccccaggtctttgaccttctgccatcctccagccagagg
ctgaacccggccgccctgcagccagtcctgacagaccccaccctgcacgagctctatgtc
atctccaccttcaagctgcagagtaagagctcagccaccatctttggcctctactcctcg
agtgacaacagcaaatactttgaattcactgtgatgggacgcctgaacaaagccatcctc
cgttacctaaaggatgatgggaagattcatctggtggttttcaacaacctgcagctggcg
gatgggaggcgccaccggattctcctgagactcagcaatttgcagagaggggccggctcc
gtagaactctacttggactgtgtccaggttgattcagtgaacaacctccccagagccttc
tctggtctcacccagaacccacaggccattgaattgagaacattccagaggaagccccag
gacttcttggaagagctgaagctggtggtgaggggctctctgttccaggtggccagccta
caagactgtttcctgcagcagagtgagccgctggctgccacaggcacaggagactttaat
cgacagtttttgggtcaaatgacacaattaaaccagctccttggagaggtgaaagatctt
ctgaggcagcaggtcaaggaaacatcatttttgcgaaacactattgctgagtgccaggct
tgtggccctctcagcttccagtccccaaccccaaacacgctggtgcccatagctcctcca
gcacccccaacccgaccaacacgtcgctgtgactccagcccttgtttccgaggtgtccga
tgcacggacaccagggacggcttccaatgtggaccctgcccagatggctacacggggaac
gggatcacctgttctgacgtggatgagtgtaaataccatccctgctaccctggtgtgcgc
tgcacaaatttggctccgggtttcagatgtgatgcctgtccagtaggcttcacggggccc
atggtgcagggcgtggggatcaactttgccaaaacaaacaagcaggtgtgcactgatgtt
gacgagtgtcggaacggagcgtgtgttctgaactccatctgcattaacactctgggctct
taccgctgtgggccttgcaagccagggtacactggtgaccagacgaggggatgcaggacc
gaaaggagctgccggaacccagagcagaacccgtgcagtgtgcatgcgcagtgcattgag
gaacggcaaggggatgtgacgtgtgtgtgcggtgttggttgggccggcgacggctatgtc
tgtggaaaggatgtggacatcgacagttaccccgatgaagaactgccgtgctcagccagg
aactgcaagaaggataactgcaagtatgtgccaaactccggccaagaagacgcagacaga
gatggcattggagacgcctgtgatgaggatgcggatggagacgggatcttgaatgagcag
gacaactgtgtcctgactcacaatgtggaccagaggaacactgataaagatatctttggg
gatgcctgtgacaactgccggggcgtcctgaataatgaccagaaggacactgacggggat
gggaaaggagacgcctgtgatgacgacatggatggagacggaataaaaaacattttggac
aactgtccccgagttcccaaccgcgaccaacaggatcgggatggcgatggtgtcggagac
gcctgtgacagctgtcctgatgtcagtaaccctaaccagtcggatgtggataacgatctg
gttggggactcctgtgacaccaaccaagacagtgatggggatggccaccaggacagcaca
gacaactgccccaccgtcattaacagcgcccagctggacaccgacaaggacgggattggc
gatgaatgcgatgacgatgacgataatgacggcatcccagacctggttccccctggccca
gacaactgcaggcttgttcccaacccagcccaggaagatagcaacaatgatggagtagga
gatatctgtgaagctgacttcgaccaggacaaggtcattgatcgcattgatgtgtgtcct
gagaatgcggagatcaccctgactgacttcagggcctatcagactgtggtcctggaccct
gaaggggatgcccagatcgaccccaactgggtggtcctgaaccagggcatggagattgtg
cagaccatgaacagtgaccctggcctagcagtcgggtacacggcatttaatggagttgac
tttgaagggaccttccacgtaaacacccagacagatgacgactatgccggctttattttt
ggttaccaagacagttccagcttctatgtggtcatgtggaaacagacagagcagacatac
tggcaggctacgccattccgtgcagtagcagaacctggtattcagctcaaggccgtgaag
tctaaaactggcccaggggaacatctccgaaactccctgtggcacacaggggacaccagc
gaccaggtcaggctgctgtggaaggactccaggaatgtgggctggaaggacaaggtgtcc
taccgctggttcctgcagcataggccccaggtgggctacatcagggtgcggttttatgaa
ggctcagagttggtggctgactccggggtcactatagacaccaccatgcgcggaggccga
ctgggcgtgttctgcttctctcaggaaaacatcatctggtccaacctcaagtaccgctgt
aacgacaccataccagaggacttccaggagttccagatccagacctttgaccgcctggat
aattaa

All links

Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   ENSEMBL-RNO (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (7)   
   Pfam (7)   
All databases (28)   

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