KEGG T01003: 294236

Rattus norvegicus (rat): 294236

Entry

294236 CDS T01003

Gene name

Gtf2h4

Definition

general transcription factor II H, polypeptide 4

Orthology

K03144

transcription initiation factor TFIIH subunit 4

Organism

rno Rattus norvegicus (rat)

Pathway

rno03022	Basal transcription factors
rno03420	Nucleotide excision repair
rno05203	Viral carcinogenesis

Module

rno_M00290

Holo-TFIIH complex

Class

Genetic Information Processing; Transcription; Basal transcription factors [PATH:rno03022]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rno03420]
Human Diseases; Cancers; Viral carcinogenesis [PATH:rno05203]

SSDB

Motif

Pfam:

Tfb2 Helicase_C_3 SinI

Other DBs

NCBI-GI:

NCBI-GeneID:

RGD:

Ensembl:

UniProt:

Position

20p12

AA seq 463 aa
MEITPARGGLNRAHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRM
LFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLR
IALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLL
SQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQ
LSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGVSGAGG
TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI
TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE
LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS

NT seq 1392 nt +upstreamnt +downstreamnt
atggagatcacccccgcgaggggtggactgaaccgagcacacctacaatgcaggaatcta
caggagttcttaggcggcctgagccctggggtgctggaccgattgtatggacaccctgcc
acttgtctggctgtcttcagggagctcccttccttggctaagaactgggtgatgagaatg
ctctttctggagcagcctctaccacaggctgccgtggccctgtgggtgaagaaggagttc
agcaaggctcaggaggaaagtaccgggctgttgagtggcctccgtatttggcatacccag
ctgctccccggtggactccagggcctcatcttgaaccctgtcttccgccagaacctccga
attgctcttctgggtgggggcaaggcctggtctgatgacacaagtcagctgggaccagac
aagcacgcccgggatgtcccctcacttgataagtacgccgaggagcgctgggaggtggtc
ttgcatttcatggtgggctcccccagtgcagctgtcagccaggacctggctcaactcctc
agccaggccgggcttatgaaaagcaccgaacccggagagccaccgtgtatcacttccgct
ggcttccagttcctgctcctagacacgcctgcccagctctggtacttcatgctgcagtat
ctgcagacagcccagagtcggggcatggatctagtggagattctctccttccttttccag
ctcagtttctctactcttggcaaggactactccgtggaggggatgagtgattctttgttg
aacttcctgcaacacctgcgtgaattcgggcttgttttccagaggaagaggaagtcccgg
cgttactaccccacacgcctggccatcaacctctcatctggtgtctccggggctgggggc
actgtgcaccagcctggcttcattgtcgtcgaaaccaattacagactgtatgcctatacc
gagtcggagctgcagatcgccctcattgctcttttctccgagatgctctatcgattcccc
aacatggtggtggcacaagtgacccgggagagcgtgcagcaggccatcgccagtggcatc
actgcccagcagattatccatttcctaaggaccagggcccatccagtgatgctcaaacag
actcctgtgctgccccccaccataacagaccagattcggctgtgggagctggaaagggac
agacttcggttcactgaaggcgttctgtacaaccagttcctatcgcaagtggactttgaa
ttgctgctggcccacgcgcgggagctgggcgtgctcgtgttcgagaactcggccaagcgg
ctgatggtggtgacaccggcggggcacagcgacgtcaagcgcttctggaagcggcagaag
cacagctcctga

All links

Pathway (4)   
   KEGG PATHWAY (3)   
   KEGG MODULE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (1)   
   ENSEMBL-RNO (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (27)   

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