KEGG   Rattus norvegicus (rat): 301128
Entry
301128            CDS       T01003                                 
Symbol
Kdm4b
Name
(RefSeq) lysine-specific demethylase 4B isoform 1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    301128 (Kdm4b)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     301128 (Kdm4b)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     301128 (Kdm4b)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    301128 (Kdm4b)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD LBR_tudor Tudor_3 SLX1_C
Other DBs
NCBI-GeneID: 301128
NCBI-ProteinID: NP_001037701
RGD: 1588576
Ensembl: ENSRNOG00000049221
UniProt: M0RB75 A6KQY4
Position
9:1245885..1324384
AA seq 1099 aa
MGSEDHSAQNPSCKIMTFRPTMDEFRDFNRYVAYIESQGAHRAGLAKIIPPKEWKPRQTY
DDIDDVVIPAPIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLER
KYWKNLTFVSPIYGADISGSLYDDDVAQWNIGNLRSILDMVERECGTIIEGVNTPYLYFG
MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAIGFFPGSSQGCDAFLR
HKMTLISPIILKKYGIPFSRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY
GKVATQCTCRKDMVKISMDVFVRILQPERYEQWKQGRDLTVLDHTRPTALSSPELSSWSA
SRTSLKAKLLRRQISVKESRPWRKAEEERRPSLERRREPTRRPGPASHRRRSQPKKSKPE
DSRSPGEATAGVAGLDEARGCSRRETMPEEEEEEELSPSQGHEAEGVEEDGRGKPRPTKA
RSKKKTPSLLSPPLLSAPPALFPAEEVLRLPPQPKSPGPAMGPMAAEGGPPPTALNVVPP
GVPGEETEVRPRPIIPMLYVLPRANSSDGDREHAAHPQLAPMELGPEEEDQAQAGDSQGT
TSFSKLKVEIKKSRRHPLGRPPTRSPLSVVKQEASSDEEAFPFSGEDDGSDPEALRSLLS
LQWKSKAASFQAERKLNAAAALSEPYCAVCTLFYPYSQSVQTEREVLATPGDSAVQPPSK
SGQRTRPLIPEMCFTSSGENTEPLPANSYVGEDGTSPLISCAHCCLQVHASCYGVRPELA
KEGWTCSRCAAHAWTAECCLCNLRGGALQRTTEHRWIHVICAIAVPEVRFLNVIERNPVD
VSAIPEQRWKLKCVYCRKRMKRVSGACIQCSYEHCSTSFHVTCAHAAGVLMEPDDWPYVV
SITCLKHRASGAGGQLLRTVSLGQIVITKNRNGLYYRCRVIGTTAQTFYEVNFDDGSYSD
NLYPESITSRDCLRLGPPPEGELVELRWTDGNLYRARFISMATSLIYQVEFEDGSQLTVK
RADIFTLEEELPKRVRSRLSLSTGTPQEPSFSGDGVKAAKRPRVATVLATTTEDTGRSPE
YLAFMESLLQAQGQPGAPF
NT seq 3300 nt   +upstreamnt  +downstreamnt
atggggtctgaggaccacagtgcccagaatcccagctgcaaaatcatgaccttccgcccc
accatggatgaattcagggacttcaacagatatgtggcctacattgagtcgcagggtgcc
caccgtgccggcctggccaagatcatcccacccaaggagtggaagccacggcagacatat
gatgacattgatgacgtggtcatcccagcacctatccaacaggtggtgacaggccagtcg
gggcttttcacacagtacaacatccagaagaaggccatgactgtgggggagtaccgccgc
ctagccaacagtgagaagtactgtaccccacgccatcaggacttcgatgacctggaacgc
aagtactggaagaacctgacctttgtctcacccatctatggggctgacatcagtggctcc
ctgtatgatgatgacgtggcccagtggaacatcggcaatctgaggtccatcctagacatg
gtggagcgcgaatgcgggaccatcattgagggtgtgaacacaccctacttgtactttggc
atgtggaaaaccacgtttgcctggcacacagaggacatggacctctacagcatcaactac
ctgcactttggcgagcccaagtcctggtacgccataccaccagagcacggcaagcgcctg
gagcgcctggccataggcttcttccctgggagctcacagggctgcgatgccttcctaagg
cacaagatgacgctcatctcgcccatcatcctgaagaagtatggcatccccttcagccgg
attacacaggaagctggggagttcatgatcacattcccctatggttaccatgcgggcttc
aaccatggctttaactgcgctgagtccactaactttgccacgctgcgctggatcgactat
ggcaaagtggccacacagtgtacatgtcgaaaggacatggtcaagatctccatggatgtg
tttgtacgcatactgcagcccgaacgctatgagcagtggaagcaagggcgtgacctcaca
gtgctggaccacacgaggcccacagccctgagcagtcccgagctcagctcttggagtgcc
tcacgaacttcactcaaggccaagctcctgcgaagacaaattagtgtgaaggagagcaga
ccctggagaaaggctgaggaggagaggaggccgagtctagagaggaggcgggagccgacc
aggaggccagggccggcgtcacaccggagacggagccagcccaagaagtccaaacctgaa
gactccaggtctccaggggaagccacagctggggtagctggtctggacgaggccaggggc
tgttcccggagggagaccatgcctgaggaggaggaggaagaggagctgtcaccttcacag
ggccatgaggccgagggcgtggaagaggatggcagaggcaagcctcggccaactaaggcc
aggagcaagaagaagactcccagcctactgtcacccccattgctgtctgccccaccagcc
ctattccccgccgaggaggtcctgaggcttccaccccaacctaagtctccagggccagcc
atgggccccatggctgcagaggggggtcctccaccaacagccctcaatgtcgtgcctcct
ggggtgccaggtgaggaaacagaggtgcggccccggcccattatcccaatgctgtacgtg
ttgccccgtgccaacagctctgatggggacagggagcatgctgcccatccacagttggca
cccatggagctggggccagaagaggaagaccaggcccaggctggtgactcacagggaaca
acctccttctctaagctgaaggtggagatcaaaaagagtcggcgtcaccccttgggtcgg
ccacccacacggtccccgctatctgtggtcaagcaggaggcctcaagtgatgaagaggcc
ttcccattctcaggagaggatgatggcagtgaccctgaggccttgaggtccctgctgtcc
ctgcagtggaagagcaaggcagccagcttccaagctgagaggaagctgaatgcggcagcc
gccctcagcgagccctactgtgccgtctgtaccctcttctacccctacagccagtcagta
cagacagagcgggaggtcctggccactccaggggacagtgctgtccagccgccctccaaa
agtggccagaggacacggccactgatccctgagatgtgcttcacttcaagtggggagaac
acagaaccgctgcctgccaactcctacgtcggtgaggacggcaccagtccactcatctcc
tgtgcccactgctgtctgcaggtccatgccagttgctatggtgtccggcctgagctggcc
aaagagggctggacatgttcccggtgtgcggcccacgcctggactgcggaatgctgtttg
tgcaaccttcggggaggagcactacagaggaccacagagcacaggtggattcatgtgatc
tgcgccattgcagtccccgaggtacgattcctcaatgtgatcgaacgcaacccagtggac
gtcagtgccatccctgagcagcgatggaaactgaaatgtgtgtactgccgcaagcgtatg
aagagggtgtcgggtgcctgcatccagtgctcctacgagcactgctccacgtccttccat
gtgacctgcgcacatgctgctggcgtcctcatggagccagatgactggccctatgtagtg
tccatcacctgcctcaagcacagggccagtggagcagggggccagctgttgcgcacggtg
tccctgggccagatcgtcatcaccaagaatcgcaatgggctctactaccgctgccgtgtc
attggcaccactgctcagacattctatgaggtcaacttcgatgatggctcctacagcgac
aacctgtatccagagagcatcacaagcagagactgtctgcggctagggccgcctcctgag
ggcgagctggtggagctgcggtggacagacggtaatctgtacagagccaggttcatctcc
atggccaccagcctcatctaccaggtagagtttgaggatggatctcagctgactgtgaag
cgtgcggacatcttcacacttgaagaggaattgcccaagagggtacggtcccggctgtca
ctgagcaccggcacaccacaggagcccagcttctccggagatggcgtgaaggccgccaag
cgcccacgggtggccaccgtgctggccaccaccactgaggacacagggcgcagcccagaa
tacctggccttcatggagagcctgctgcaggcgcagggccagcctggagcacccttctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (11)   
   UniProt (2)   
   RefSeq(pep) (9)   
DNA sequence (20)   
   RefSeq(nuc) (10)   
   GenBank (5)   
   EMBL (5)   
Protein domain (10)   
   Pfam (10)   
All databases (53)   

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