KEGG R.norvegicus: 307231

Rattus norvegicus (rat): 307231

Entry

307231 CDS R.norvegicus

Gene name RGD1560225, RGD1560225_predicted

Definition similar to nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 1

Orthology K04446 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent

Pathway rno04310 Wnt signaling pathway
rno04360 Axon guidance
rno04370 VEGF signaling pathway
rno04650 Natural killer cell mediated cytotoxicity
rno04660 T cell receptor signaling pathway
rno04662 B cell receptor signaling pathway

Class Genetic Information Processing; Transcription; Transcription factors
Environmental Information Processing; Signal Transduction; Wnt
signaling pathway [PATH:rno04310]
Environmental Information Processing; Signal Transduction; VEGF
signaling pathway [PATH:rno04370]
Organismal Systems; Immune System; Natural killer cell mediated
cytotoxicity [PATH:rno04650]
Organismal Systems; Immune System; T cell receptor signaling pathway
[PATH:rno04660]
Organismal Systems; Immune System; B cell receptor signaling pathway
[PATH:rno04662]
Organismal Systems; Development; Axon guidance [PATH:rno04360]

SSDB

Motif Pfam: RHD TIG
PROSITE: PRO_RICH REL_2

Other DBs NCBI-GI: 109507625
NCBI-GeneID: 307231
RGD: 1560225

Position 18q12.3

AA seq 1006 aa
MTGLEQDPEFDFDFLFEFDQSGGGAAAAEHYSYASPSVTSTLPLPTAHSALPAACHDLQT
STPGISAVPSANHPSGYGGAVDSGPSGYFLSSGNTRPNGAPTLESPRIEITSYLGLHHGS
NQFFHDVEVEDVLPSCKRSPSTATLHLPSLEAYRDPSCLSPASSLSSRSCNSEASSYESN
YSYPYASPQTSPWQSPCVSPKTTDPEEGFPRSLGACHLLGSPRHSPSTSPRASVTEESWL
GARGSRPTSPCNKRKYSLNGRQPSCSPHHSPTPSPHGSPRVSVTEDTWLGNTTQYTSSAI
VAAINALTTDSTLDLGDGVPIKSRKTALEHVPSVALKVEPAGEDLGTTPPTSDFPPEEFA
FQHLRKGAFCEQYLSVPQASYQWAKPKSLSPTSYMSPSLPALDWQLPSHSGPYELRIEVQ
PKSHHRAHYETEGSRGAVKASAGGHPVVQLHGYLENEPLTLQLFIGTADDRLLRPHAFYQ
VHRITGKTVSTTSHEAILSNTKVLEIPLLPENNMRAIIDCAGILKLRNSDIELRKGETDI
GRKNTRVRLVFRVHIPQPSGRTLSLQVASNPIECSQRSAQELPLVEKQSTDSYPVIGGKK
MVLSGHNFLQDSKVIFVEKAPDGHHVWEMEAKTDRDLCKPNSLVLEIPPFRNQRITSPVQ
VSFYVCNGKRKRSQYQHFTYLPANVPIIKTEPTDDFEPALTCGPMSQGLSPLPRPYYSQQ
LTAPPDPGSCLVAGFAPCSQRNTLMPTSPNASPKLHDLSSPAYAKGLANPGHSGHLGLQP
PASEAPTMQELPRPMAVQPNSPEQPTSVRLQPQVSPHLNSSCPLGLQQVLYPNSPSSPLP
PAAHEPTCLQPSALPPDVGHRQQQPQKVHRNESPSILPEVCEDSDHNLAPVPVVIKQEPE
ELDQLYLDDGCSLLTGQVPVSGVSEAAATGYAHGGANAEATQDYDVSEQNSLVLEIPPFR
NQRITSPVQVSFYVCNGKRKRSQYQHFTYLPANGFYVLTTNPQSSS

NT seq 3021 nt +upstreamnt +downstreamnt
atgacggggctggagcaggacccggagttcgacttcgatttcctcttcgagttcgatcag
agcggcgggggcgccgcggccgcagaacactacagttatgcgtcccctagcgtcacctca
actctgccccttcccacagcacactccgccttgccagcggcatgccatgacctccagacg
tccaccccgggcatctcagctgttccttcggccaatcacccctctggttatgggggcgct
gtggacagtgggccttcaggatacttcctgtcctccggcaacacgagacccaatggggcc
ccgactctcgagagtcctcgaatcgagatcacctcctatctgggccttcaccacggcagc
aaccaatttttccacgatgtggaggtggaagacgtacttcctagctgcaagcggtcacca
tctacagcaaccctgcacctgcccagtctggaagcctacagagacccctcctgcctgagc
ccagccagcagcctgtcctccaggagctgtaactctgaggcgtcctcctatgagtccaac
tattcatacccgtacgcatccccccagacctctccatggcagtcaccctgtgtgtctccc
aagaccacggacccagaggagggctttccccgaagcctgggtgcctgccacttgctggga
tcgccaaggcactccccatccacctctcctcgtgcaagcgtcaccgaggagagctggctc
ggtgcccgtggctcccggcccacatccccctgcaacaagcgcaaatacagtctcaacggc
aggcagccctcctgctcaccccaccactcgcccacaccatccccccatggctcccctcgg
gtcagcgtgacggaagacacctggcttggtaacaccacccagtacaccagctctgctatt
gtggcagccatcaacgccctgaccactgatagcactctggacctgggtgacggtgtccct
atcaagtctcgaaagacagccctggagcacgtgccctctgtggccctcaaggtagagccg
gctggggaagacctgggcaccacaccacccacttctgacttcccacccgaggagttcgcc
ttccagcaccttcggaagggtgccttttgtgagcagtatctgtcggtgccacaggcctcg
tatcagtgggcaaagcccaagtctctatccccaacgtcatacatgagcccatccctgcct
gcccttgactggcagctgccgtcgcactctggtccgtatgaactccggatcgaggtgcaa
cccaagtctcaccacagggctcactatgagacggaaggcagccggggagctgtgaaggct
tctgctggaggacaccctgtcgtgcagctacatggttacttggaaaacgagcctctcacg
ctccagctgttcattgggacggctgacgaccgcctgctacggccccatgccttctaccag
gtccaccggatcacggggaagactgtctccaccaccagccacgaggctatcctgtccaac
accaaagtcctggagatcccactgcttccagaaaataacatgcgagccatcatcgactgt
gctgggatcctgaagctcagaaactctgatatcgagctgaggaaaggggagacagacatc
gggagaaagaacaccagggtgcggctggtcttccgagtccacatcccccagcccagcggc
cggacgctgtctctccaggtggcctcaaacccgatcgagtgctcccagcggtcggcccag
gaactgcccctcgtggagaagcagagcacagacagctacccggtcattggagggaagaag
atggtgttgtctggccataactttctgcaagactccaaggtcatcttcgtggagaaggcc
ccagatggccaccatgtctgggagatggaagcgaaaactgaccgagacctgtgcaagcca
aattccctggtgctggagataccacctttccgcaaccagagaataaccagccccgtccaa
gtcagcttctatgtctgcaacgggaagcggaagagaagccagtaccagcatttcacgtac
cttcctgccaatgttccaattataaagacagaacccacggacgactttgagccagctctg
acctgtggaccaatgagccagggacttagccctctgccgaggccttactatagccaacaa
ctcaccgcgcctcctgaccctggctcctgccttgtggccggctttgccccctgctcacag
aggaacacgctgatgcccacgtctcccaatgcaagcccaaagctccacgacctttcctct
cccgcctacgccaagggcctcgccaacccaggccacagtggtcaccttggacttcagcca
ccagcttcagaggcccccaccatgcaggaattgccgagacccatggccgtccagcccaac
tcgcctgagcagcccacatccgtcaggctacagccgcaggtgagtccacatctgaacagt
agctgtccccttggtctccaacaagtgctctatcccaacagcccctcctctccacttcca
cctgctgcccacgagccaacctgcttacagccctcagctctccctcctgatgtgggccac
cggcagcaacaaccgcagaaggttcacagaaatgaatctccgtccatactgccagaggtg
tgtgaggacagtgaccataacttggcccctgttcctgtagtgatcaagcaagagcctgag
gaattggaccagttgtacctggatgatggttgttccctgctcactggacaagttccagtc
tcaggtgtgtctgaagcagctgccactggctacgctcacggcggtgccaatgcagaagct
actcaagattatgatgtcagtgagcagaattccctggtgctggagataccacctttccgc
aaccagagaataaccagccccgtccaagtcagcttctatgtctgcaacgggaagcggaag
agaagccagtaccagcatttcacgtaccttcctgccaatggtttctatgtcctaaccacc
aaccctcaaagctcatcatga

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   RGD-RNO (1)   
Protein sequence (3)   
   RefSeq(pep) (1)   
   IPI (2)   
DNA sequence (22)   
   GenBank (11)   
   EMBL (11)   
Protein domain (4)   
   Pfam (2)   
   PROSITE (2)   
All databases (40)

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