KEGG   Rattus norvegicus (rat): 311236
Entry
311236            CDS       T01003                                 
Symbol
Lrrc4c
Name
(RefSeq) leucine-rich repeat-containing protein 4C precursor
  KO
K07523  netrin-G1 ligand
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04360  Axon guidance
rno04514  Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    311236 (Lrrc4c)
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    311236 (Lrrc4c)
SSDB
Motif
Pfam: LRR_8 LRR_4 LRR_5 I-set Ig_3 ig LRR_1 V-set LRR_9 Ig_2 LRRNT Ig_6 Sp38 Herpes_gE_N Syndecan
Other DBs
NCBI-GeneID: 311236
NCBI-ProteinID: NP_001101223
RGD: 1311013
Ensembl: ENSRNOG00000029798
UniProt: A6HNL6 D3ZXT1
Position
3:102760152..104139222
AA seq 640 aa
MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKV
ICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF
NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG
ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ
GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH
NPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPP
ADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQD
TGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTP
VIDWETTNVTTSLTPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMA
AVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNS
YKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI
NT seq 1923 nt   +upstreamnt  +downstreamnt
atgttgaacaagatgaccttacatccacagcagataatgataggtcctaggtttaacagg
gccctatttgaccccctgcttgtggtgctgttggctcttcaacttcttgtggtggctggt
ctggttcgggctcaaacctgcccttcagtgtgctcttgtagcaaccagttcagcaaggtg
atttgtgttcggaaaaaccttcgtgaggttcctgatggcatctccaccaacacaaggctg
ctgaacctccatgagaaccaaatccagatcattaaagtgaacagcttcaagcatttgagg
cacttggaaatcctccagttgagcaggaaccatattcgaaccattgaaatcggggccttc
aatggtctggcgaacctcaacactctggaactctttgacaatcgtcttaccaccatccca
aatggagcttttgtatatttgtctaaactgaaggagctgtggttgcggaacaaccctatt
gaaagcatcccttcctatgcttttaacagaatcccttctttgcgccgcctagacttaggg
gaattgaaaaggctttcatacatctcagaaggtgcctttgaaggtctgtccaacttgagg
tatttgaaccttgccatgtgcaacctccgggaaatccctaacctcacgccgctcatcaaa
ctagatgagctagatctttctgggaaccatttgtctgcaatcaggcctggctcttttcag
gggttgatgcaccttcaaaaactgtggatgatacagtctcagattcaagtgattgaacgg
aatgcctttgataaccttcagtcactagtggagataaacttggcacacaacaatctaaca
ttactgcctcatgacctcttcacacccttgcatcatctagagaggatacaccttcaccac
aacccatggaattgtaactgtgacatcctgtggctcagctggtggataagagacatggcc
ccctccaacacggcttgttgtgccaggtgtaacactccccccaacctgaaagggaggtac
atcggagagctggaccagaattactttacatgctatgctccagtaattgtggagccccct
gcagacctcaatgtcactgaaggcatggccgctgagctgaaatgtcgggcgtctacgtcc
ctgacttccgtatcttggattactccaaatggaactgtcatgacccacggggcatacaaa
gtgcggatagctgtgctcagcgacggtactttaaatttcacaaatgtaactgtgcaagac
acaggcatgtacacatgtatggtgagtaattctgttggcaacaccactgcttctgccacc
ttgaatgttactgcggcaaccactactccattctcgtacttttcaactgtaacagtagag
actatggaaccttctcaggatgaggcacggaccacagataacaatgtgggccccactcca
gtgatcgattgggagaccaccaatgtaaccacatctcttacgccacagagcacaaggtcg
acagagaaaacattcaccatcccagtaactgacattaacagcggaatcccaggaattgat
gaagtaatgaaaacaacaaaaatcattattgggtgttttgtggccatcactctcatggct
gccgtgatgctggtcattttctataagatgaggaaacagcaccatcggcaaaatcaccat
gctccaacgaggactgttgaaatcattaacgtggatgatgagatcactggggacacgccc
atggaaagccacctgcccatgcctgcgattgagcatgagcacctaaaccattataactct
tacaaatctcccttcaaccacacaacaacagtaaacacaataaattcaatacacagttca
gtgcatgaaccgttattgatccgaatgaactctaaagacaatgtacaagagactcagata
taa

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (33)   
   UniProt (2)   
   RefSeq(pep) (31)   
DNA sequence (31)   
   RefSeq(nuc) (31)   
Protein domain (15)   
   Pfam (15)   
All databases (89)   

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