KEGG   Rattus norvegicus (rat): 312649
Entry
312649            CDS       T01003                                 
Symbol
Tsen2
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2
  KO
K15322  tRNA-splicing endonuclease subunit Sen2 [EC:4.6.1.16]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    312649 (Tsen2)
Enzymes [BR:rno01000]
 4. Lyases
  4.6  Phosphorus-oxygen lyases
   4.6.1  Phosphorus-oxygen lyases (only sub-subclass identified to date)
    4.6.1.16  tRNA-intron lyase
     312649 (Tsen2)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing endonuclease complex
    312649 (Tsen2)
SSDB
Motif
Pfam: tRNA_int_endo tRNA_int_endo_N
Other DBs
NCBI-GeneID: 312649
NCBI-ProteinID: NP_001014079
RGD: 1309946
Ensembl: ENSRNOG00000060175
UniProt: Q5M954
Position
4:150275389..150310846
AA seq 463 aa
MAEAVFRAPKRKRRVYESYESPLPIPFSQDQSPRKEFRIFQAEMISNNVVVRGTEDMEQL
YGKGYFGKGILSRSRPNFTISNPKLAARWKGVQTDMPIITSEKYQHRVEWARDFMRRQGH
DESTVQKILTDYTEPLEPPYRERKGESPQHEPLSSKADSSLEGREGKDELSVTTGGAGQS
DDLQGLNTHSDCRQEGPGHATLTVASPSSLNGHAIEDPEALSQIPCCSQEALGQQDDLWP
EASSQIAGESRAAHEYVLIEEELCDVQEGAAPHDELLKRKRLVCRRNPYRIFEYLQLSLE
EAFFLAYALGCLSIYYEKEPLTIVKLWQAFTAVQPTFRTTYMAYHYFRSKGWVPKVGLKY
GTDLLLYRKGPPFYHASYSVIIELVDDNFEGSLRRPFSWKSLAALSRVSGNVSKELMLCY
LIKPSTMTNEDMETPECMRRIQVQEVILSRWVSSRERSDQDEL
NT seq 1392 nt   +upstreamnt  +downstreamnt
atggcagaggcagtcttccgtgctccaaagaggaaaaggagagtgtacgagagttacgag
tcaccgctgcccatcccctttagtcaggaccaaagtcccaggaaggaattccgaatattc
caggctgaaatgattagcaacaatgtggtggtgaggggcacagaggacatggagcagctg
tatgggaagggttactttggaaaggggatcctttcaagaagtcgtccgaacttcacaatc
tccaatcccaagctggctgccagatggaaaggtgtgcagacagacatgcctataatcacc
tcagagaagtatcagcaccgagtggaatgggccagggatttcatgcggaggcagggccat
gatgagagcactgtgcagaagatccttacggactacacagaaccattggagcctccttac
agggagaggaaaggagagagcccacagcatgaacccctgagctccaaggccgactcctcc
ctggaaggcagagagggaaaggatgaactttctgtgaccaccggaggtgctggacaatca
gatgacctgcagggcctcaacacacactcagactgccggcaggaggggcctggccatgcc
acactcactgtggctagtccttctagccttaatgggcatgcgatagaggaccccgaggct
ctgtcccagatcccctgctgtagccaggaagccctcggtcagcaggatgacctttggcct
gaagccagcagccagatagcaggagagagtagggctgctcacgagtatgtgctcatagag
gaagagctgtgtgatgtccaggagggggcagcaccacatgacgagttgctgaaaagaaag
agacttgtgtgcagaaggaacccatacaggatctttgagtatctacagctcagcctagaa
gaggctttcttcctggcatacgccctgggatgtttaagtatctactatgagaaggagcct
ttgaccatagtgaagctctggcaagccttcactgcagtccagcccaccttcaggactacc
tacatggcctaccactacttccgaagcaaaggctgggtgcccaaagtggggctcaagtac
ggaacagatctgttgctgtatcggaaaggccctccattttaccatgcaagctactctgtc
atcattgagctcgtggatgacaactttgaagggtccctccgaaggcctttcagctggaag
tcactggccgccttgagcagagtctcagggaacgtctcaaaggagctgatgctgtgttac
ttgattaagccctctaccatgactaacgaagacatggagaccccagaatgcatgaggagg
attcaagttcaggaggtgattctcagccgatgggtgtcttcccgagagagaagtgaccaa
gatgagctttga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (9)   
   RefSeq(nuc) (7)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (31)   

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