KEGG R.norvegicus: 312936

Rattus norvegicus (rat): 312936

Entry

312936 CDS R.norvegicus

Gene name Sox17

Definition SRY (sex determining region Y)-box 17

Orthology K04495 transcription factor SOX17 (SOX group F)

Pathway rno04310 Wnt signaling pathway

Class Genetic Information Processing; Transcription; Transcription factors
Environmental Information Processing; Signal Transduction; Wnt
signaling pathway [PATH:rno04310]

SSDB

Motif Pfam: DUF3547 HMG_box
PROSITE: PRO_RICH HMG_BOX_2

Other DBs NCBI-GI: 157824128
NCBI-GeneID: 312936
RGD: 1305371
RATMAP: ENSRNOG00000027357
Ensembl: ENSRNOG00000027357

Position 5q12

AA seq 423 aa
MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSSLGDVKVKGEVVASSGAPAGTSS
RAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
AERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALAEPQAGALGPEGGRVAMDGLG
LPFPEPGYPAGPPLMSPHMGAHYRDCQGLGAPALDGYPLPTPDTSPLDGVEQDPAFFAAP
LPGDCPAAGAYTYAQVSDYAVPAEPSAGPMRVGPDPSGSAMPGILAPPSALHLYYGAMGS
PAASAGRGFHAQPQQPLQPQPPPPPPPPPPPQQHPTHGPGQPSPPPEALPCRDGTEPNQP
TELLGEVDRTEFEQYLHFVYKPEMGLPYQGHDCGVNLSDSHGAISSVVSDASSAVYYCNY
PDI

NT seq 1272 nt +upstreamnt +downstreamnt
atgagcagcccggatgcgggatacgccagtgacgaccagagccagcctcggagcgcgcag
cccgcggtgatggccgggttgggcccctgtccctgggccgagtccctgagctctctcggg
gacgtaaaggtgaaaggagaggtggtggcgagtagcggggcgccagccgggacctcgagt
cgagccaaagccgagtctcgcatccggcggccgatgaatgcctttatggtgtgggccaaa
gacgaacgcaagcggctggcacagcagaacccggatctgcacaacgcagagctgagcaag
atgctaggcaaatcctggaaggcgttgaccttggcggagaagcggcccttcgtggaagag
gccgagcggctgcgtgtgcagcacatgcaggaccatcccaactacaagtaccggccgcgg
cggcgcaagcaggtgaagcgcatgaaacgggtggagggaggcttcctgcacgctctcgcc
gagcctcaggccggcgcgcttggtcccgagggcggccgcgtggccatggatggcctgggt
ctgcctttcccggagccaggctatccggccggcccgccgctgatgtccccgcacatgggc
gcccactaccgtgactgccagggactgggcgcacccgcgctcgacggctaccctctgccc
actccggacacatccccgttggatggcgtggagcaggacccggctttctttgctgccccg
ctgccaggggactgcccggcggccggagcctacacgtatgctcaggtctcggactatgcg
gtgcccgcagagccgtccgctggccccatgcgagtgggacccgacccctccggctctgcg
atgccggggatcctggcgccccccagtgctctgcacctgtactacggcgcgatgggctcg
cccgcggcaagcgccgggcgcggtttccacgctcagccccagcagccactgcaaccgcag
ccaccgccgccaccaccaccgcctccaccgccgcagcagcacccgacgcacggtccgggg
cagccttctccacctcccgaggctctgccctgccgggatggcacggaacccaaccagccc
actgagctactaggggaggtggaccgcacggaattcgaacagtatttgcactttgtgtat
aagccggagatgggtcttccctaccagggacacgactgcggtgtgaacctctcggacagc
cacggagccatttcctccgtggtgtccgacgctagctcagcggtctactactgcaactac
cctgacatctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (3)   
   UNIGENE (1)   
   ENSEMBL-RNO (1)   
   RATMAP-RNO (1)   
   RGD-RNO (1)   
Protein sequence (4)   
   RefSeq(pep) (3)   
   IPI (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (2)   
   PROSITE (2)   
All databases (22)

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