KEGG   Rattus norvegicus (rat): 316599Help
Entry
316599            CDS       T01003                                 

Gene name
Usp40, LRRGT00071
Definition
ubiquitin specific peptidase 40 (EC:3.4.19.12)
Orthology
K11869  
ubiquitin carboxyl-terminal hydrolase 40 [EC:3.1.2.15]
Organism
rno  Rattus norvegicus (rat)
Class
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: 
Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
RGD: 
Ensembl: 
UniProt: 
Position
9q35
AA seq 1235 aa AA seqDB search
MFGNLFEEDYSSVSSSQYGSGKKLKTKGLEPPAPREFTKLSGIRNQGGTCYLSSLLQTLH
FTPEFREALFSLGPEELGSLEDKDKPEAKVRIIPLQLQRLFAQLLLVDQEAASTTDLTDS
FGWTSDEEMRQHDVQELNRILFSALETSLVGTSGHDLIHRLYHGTIVNQIVCKECKNVSE
RQEDFLDLTVAVKNVSGLEDALWNMYVEEEIFDYDNLYHCGTCDRLVKAAKSAKLRKLPP
FLTISLLRFNFDFVKCERYKDTSCYTFPLRINLKPFCEQSDMDDMEYMYDLFSVIIHKGG
CYGGHYHVYIKDVDHLGNWQCQEEISDSAVNLKAPQNEEETDDPLVVLKAILLQEEANQI
PVDQLGQKLLIKTGISWNKKYRKQHGPLRKFLRLHPQVFLLSTDESTVSLQRSHFPQVPS
DPQSHEQIAHTLASEPPGLRDNISCPHWFDINDSKVQPIKEKDIMQQFQGKESAYMLFYR
KATLQRPSEAQANPRYRVPCHLLKEMDAANVLLQTRRAECDSANSTFELHLHLGPHYRFF
NGALHPAVSQTESVWDLTFDKRKTVGDLRQSIFQLLEFWEGDMVLSVAKRVPAGLHVYHT
LDGDELTLGEAEIADEEDIFVWNGVEVGGVQIQTGFDCEPLLLHILHLELSGEGSECEQL
VESPHVFPANAEVGTVFTALGTPEGVLLMNSVESTDEECWTAIPQEDMKKTFREQGLRNG
SLILVQDSDSDDNSLLSKQGRWTSSMNELNWLQVKNFCQSGSEEKQVQIAVTMHTVVFDI
RIKAIKELKLMKELAENSCLRPIDRNGRLLCPVPDTSTLEEAEVKMGSSVGLCLGKAPTS
SQLFLFFALGTDIHPGAELEVIVEETLSVRDCLKIMLEKSGQQGEMWHLRKMDWCYEAGE
PLCEEDATLKELMICSGDTLLLTEGKLPSPGHLKMPIWWYQPERLSGHRESWDHLNCAFS
QGSSWGAAPTQGAPGPEPAEVSLLYLGDMEISEEATLAELKSKALALPSVLKLAVQSTSL
LRVWTVESKRPSRLLRTGWRQLKEYRLGRRTELCLELLQKEEDLGPRDVLLRTQLRIPGE
RAYSLAKDLVWDTTRGWTAGSLRQRVADFYSLPVEKIEIAKYFPEKFEWLPISSWNQQIA
KRKKKKNQDTLQGGPYYLKDGDTIGIKNLLFDDNDDFSTIRDDIGKENQKRTALEKKKSR
EVQRTQSSDVFSNSGMPTRPRGPEASLSIHVASFR
NT seq 3708 nt NT seq  +upstreamnt  +downstreamnt
atgtttgggaacctatttgaagaggactattccagtgtgtcaagtagtcagtatggaagc
gggaagaaattaaagactaaaggtttggagccacctgcccctagagaattcaccaagtta
agtggaatcagaaatcagggtggaacctgttacctcagttccctgcttcagacacttcac
ttcacacctgaattcagagaagctttattttctcttggtccggaagagctcggttctcta
gaggataaggataaacccgaagcaaaggtccggatcatacctttgcagttgcagcgcttg
tttgcccagcttctgctcgtggaccaggaggctgcatccaccacagacctcactgacagc
ttcgggtggaccagcgatgaggaaatgagacaacacgatgtgcaggaactcaaccgaatt
ctcttcagtgctttggaaacttctttagttgggacctctggccatgacctcattcatcgt
ctataccatggcaccattgtgaaccagattgtttgcaaagagtgtaagaatgtcagtgag
aggcaggaagacttcttggatttgacagtagcagtcaaaaacgtatctggtttagaagat
gcactctggaacatgtacgtggaggaggaaattttcgactatgataacttgtaccactgt
ggaacctgtgaccggctggtgaaagcagcaaagtctgccaaattacgtaagctgcctcct
tttcttactatttcattactaagatttaattttgattttgtgaaatgtgaacgctacaag
gatactagctgttatacattccccctccggatcaatctcaagcctttctgtgaacagagt
gacatggatgacatggaatatatgtatgacctcttctctgtcattatccacaaaggtggc
tgctatggaggtcattaccatgtgtacattaaagacgttgatcatctcggcaactggcaa
tgtcaagaggagataagtgattcagctgtgaatttgaaagctcctcagaatgaagaagag
actgatgatccactggtggttctaaaagcaatcttattgcaggaggaggccaatcaaatt
cctgttgatcagctgggccagaaactcttgataaaaacaggaatatcttggaacaagaag
tacaggaaacagcatggaccactgcgaaagttcttacggctccatcctcaggtatttctg
ctcagcacagatgaaagtacagtcagtctccagagaagccattttccccaggtcccgtct
gatccacagagccatgaacagattgcacacacacttgcttcagaacccccaggcttaagg
gataacatcagttgcccacactggtttgacatcaatgattccaaagtccagccaatcaaa
gagaaagatatcatgcagcagttccagggtaaagaaagtgcctacatgctattttatcgg
aaagccacgctgcagagaccctctgaagctcaagccaatccaagatacagagttccctgt
catttactaaaggaaatggatgcagccaacgttctcctgcagacgagaagggcagaatgt
gactctgcaaacagtacttttgagttgcatctccacttgggtcctcactaccgtttcttc
aatggggctcttcaccctgcagtctctcagactgagagcgtgtgggacttaacatttgat
aaaagaaaaactgtaggagatctccgtcagtcaatatttcagctattggagttctgggaa
ggagacatggttctcagtgttgcgaagcgtgtgccagcaggacttcatgtgtaccatacc
ctcgatggagatgaactgacactgggtgaagctgaaatcgctgatgaggaagacatcttt
gtatggaatggggtggaggttggtggagtccaaattcagactggttttgactgtgaacct
ctgctgttacacattcttcatctagagttaagtggggaaggctcagagtgtgagcagttg
gtggagtcgccacatgtctttcccgctaatgccgaagtgggcactgtgttcacagccttg
ggcaccccagaaggcgtcctcctcatgaacagtgtggaatctacagatgaagagtgctgg
actgctattccccaagaagacatgaagaagacattcagagagcaaggtctcagaaatgga
agcttaattttggttcaggattcagacagtgatgataacagtctgttgtccaaacaaggg
agatggaccagcagcatgaatgagctcaactggctccaagtgaaaaacttctgccagtca
ggatctgaagagaagcaggttcagatagccgtgaccatgcacacagtggtgtttgatatt
cgaattaaagccataaaggaattaaaattaatgaaggaactagctgagaacagctgtttg
agacccattgatagaaacgggaggctcctttgtccagtaccagataccagcactttggag
gaggcagaggtgaagatggggagctccgtgggactgtgtctggggaaagcaccaacttcc
tctcagctgttcctgttttttgctctggggactgacattcaccctggggcagagctggaa
gtcatagtagaagaaacactctcagtgagagattgtttaaagataatgctggagaagtca
ggtcagcaaggagagatgtggcacttaaggaaaatggattggtgctatgaagctggtgag
cctttatgtgaagaagatgcaacattgaaagagcttatgatatgttctggggacactttg
ctgttaactgaaggaaaactgccttctccggggcacttgaagatgcccatctggtggtac
cagcctgaaaggctgtcaggacaccgtgagagctgggaccacttaaactgtgccttttct
caaggtagcagctggggagctgctcccacccaaggtgctcctggccctgagcctgcagaa
gtctctctcctctacttgggagatatggagatctcagaagaggccactttggcagaactg
aagtctaaggccttggccttgccttctgtgttgaagctcgccgtccagtccacaagcctg
cttagagtctggacagtggagagcaagcgccccagcaggctcttgcgcactggttggcgg
cagctcaaggagtacagactgggccggagaactgagctctgcttagagctccttcaaaag
gaggaggacttgggcccccgggatgtactgctgaggacacagctacgcatccctggtgag
agagcctactccctggccaaagacctagtatgggacaccaccagaggatggactgctggc
tccttgaggcagagagtggctgacttctattctcttcctgtggagaaaattgaaattgcc
aaatattttcctgaaaagtttgagtggcttccaatatctagctggaatcagcaaattgcc
aaaaggaaaaagaagaaaaaccaagatactttgcaagggggaccatattacttaaaagac
ggagacactattggcattaagaatctcttgtttgatgacaatgatgatttcagcacaatc
agagatgacattggaaaggaaaaccagaagcggacagctctggagaaaaagaaaagccga
gaagtccaacgtacacagagcagcgatgtgttctccaattcaggaatgcctactaggccc
cggggaccagaagcttctctgtccatccatgttgcgagcttcagatag

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