KEGG   Rattus norvegicus (rat): 317432
Entry
317432            CDS       T01003                                 
Symbol
Kdm5c
Name
(RefSeq) lysine-specific demethylase 5C
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rno01009]
    317432 (Kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    317432 (Kdm5c)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     317432 (Kdm5c)
Protein phosphatases and associated proteins [BR:rno01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     317432 (Kdm5c)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    317432 (Kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD ASH2L-like_WH
Other DBs
NCBI-GeneID: 317432
NCBI-ProteinID: NP_001406701
RGD: 1560601
Ensembl: ENSRNOG00000057706
Position
X:24821568..24866423
AA seq 1554 aa
MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEV
DNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVV
EEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRP
FDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYG
AGPKMMGLGLMAKDKNLRKKDKEGPECPPTVVVKEELGGDVKMESASPKTFLEGKEELSH
SPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPE
IPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTEL
VEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMP
VLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSL
AAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRA
YHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDL
NLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALA
CYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVA
LEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGP
DRVAGVQMTLAELQDFLGQMNNLPCAMHQIGDVKGILEQVEAYQTEAREALVSQPSSPGL
LQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAIMRGLLVAGASV
APSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQ
SLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHS
WREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDL
RDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASLTTNSSTASICVCGQVPAGVGAL
QCDLCQDWFHGRCVTVPRLLSSQRSSLTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILA
LLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESK
PEESLAYSSDGGDGTGNMPKVQGLLENGDSVTSPEKVATEEGSGKRDLELLSSLLPQLTG
PVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLKRVQTLLELEKAERH
GSRTRGRALERRRRRKVDRGGEPDDPAREELEPKRVRSSGPEAEEVQEEEELEEETGGEV
PPVPFPNNGSPSTQEDQDGLEPVLDAGSDTSAPFSTLTSRLLMSCPQQPSLQQL
NT seq 4665 nt   +upstreamnt  +downstreamnt
atggagctggggtccgacgatttcctaccgccgccggagtgtccggtgttcgagcctagc
tgggccgagttccgagaccctctaggctacatcgcgaaaatcagacccatcgccgagaag
tccggcatttgcaagatccgcccacccgcggactggcagccaccctttgctgtggaagtg
gacaacttcaggtttaccccccgaatccagaggttgaatgagctggaggcccagacaaga
gtgaaactgaactatttggaccagattgccaaattctgggagatccagggctcatcctta
aagattcccaatgtagaacggcggatcttggacctctatagcctcagcaaaattgtggtg
gaagaaggtggttatgaaactatctgcaaggaccgtcgatgggcccgtgtggcccagcgc
ctcaactatccacctggcaaaaacattggttccttgctacgctctcactatgaacgtatt
gtttatccctatgaaatgtaccagtctggagccaaccttgtgcagtgtaacacacgccca
tttgataatgaggaaaaggacaaggaatataaaccccacagcatcccccttcgacagtct
gtgcagccttccaagttcaacagttatggacgacgggcaaagagactacagccagatccg
gaacccacagaggaagacattgaaaagaatccagaattgaagaagctacagatatatgga
gcaggtcccaagatgatgggactgggcctgatggccaaggataagaatctgcggaaaaaa
gataaagaagggcctgagtgtccccccactgtggtggtaaaggaggaattaggtggggat
gtcaagatggaatcagcctcacccaagactttcctagaaggcaaggaggaactgagtcac
agccctgagccctgcaccaagatgaccatgagactacgaaggaaccacagcaatgcccag
tttattgagtcatatgtatgccgaatgtgttcccgaggagatgaagatgacaaactctta
ctgtgtgatggctgtgatgacaattaccacatcttttgcctgctgcctcctttgcctgaa
atcccgaaaggtgtctggaggtgtccaaagtgtgtcatggcggagtgtaagcggccccct
gaagcctttggctttgagcaagctacccgggaatatactcttcagagctttggagagatg
gctgactcctttaaagcagactacttcaacatgcctgtgcatatggtacccacagaactt
gtagagaaggagttctggcggctggtgaatagcatcgaggaagacgtaactgtggagtat
ggggctgacatccattccaaagaatttggcagcggtttccctgtcagtgacagtaagcgg
cacctaaccccagaggaggaggagtatgccacaagtggctggaacctgaatgtgatgcct
gtgttggagcagtctgtactgtgccacatcaatgcagatatatctggcatgaaggtacca
tggctgtatgtgggaatggtcttctcagccttttgctggcatatcgaggatcattggagt
tactctattaactacctccactggggtgagccaaaaacctggtatggagtcccatcgctt
gcagcagaacacttggaagaagtgatgaagaagctgacaccagagctttttgatagccag
cctgatctccttcaccaacttgttactctcatgaatcctaacacactcatgtcccatggt
gtgccggttgttcgcacaaaccagtgtgcaggagaatttgtcatcacttttcctcgtgct
taccacagtggtttcaaccaaggctacaactttgctgaagcagtcaacttttgcactgct
gactggctgcctgctggacgccagtgcattgagcactaccgacgactacgaagatactgt
gtcttttctcatgaggagctcatttgcaagatggctgcctgccctgagaagctggacctg
aacctggcagcagctgtacataaggagatgttcattatggtgcaggaggagcggcgtcta
cgaaaggctctgttggaaaagggtatcaccgaggctgagcgagaggcttttgagctgctt
ccagatgatgaacgtcagtgcataaagtgcaagaccacatgtttcctatctgccctggct
tgctatgactgcccagatggccttgtctgcctttctcacatcaatgacctctgcaagtgc
tccagtagccgccagtaccttcggtaccggtacaccttggatgagctccctgctatgctg
cataaactcaaagttcgagctgagtcctttgacacctgggctaacaaagtacgagtagcc
ctggaggtggaagatgggcggaagcgcagcctggaagaactgagagcactagaatctgag
gctcgtgagcgaaggtttcctaacagtgagcttctacagcgactgaagaactgcctgagt
gaggcagaggcttgtgtgtcccgggctctgggattggtcagtggccaggaagctggccct
gacagggtggctggtgtacagatgactctggccgagctacaggattttctgggccagatg
aacaacctaccctgtgccatgcaccagattggggatgtcaagggtattctggaacaggtg
gaagcctaccagactgaggcccgtgaggccctggtctcacagccctccagtccagggctg
ctgcaatccctattggagagagggcagcagctgggtgtggaggtacctgaagcccagcag
ctccaaaggcaggtggaacaggctcggtggctggatgaggtaaaacgcacgctggctccc
tctgcccgaaggggtaccctggccatcatgcggggactgttggttgcgggcgccagtgta
gcccctagccctgctgtggataaggcccaggcagagcttcaggagctgctgaccatcgct
gaacgctgggaagagaaagcccacctctgcttagaggccaggcagaagcatccaccagcc
acacttgaggccataatccatgaagcagaaaacatcccggttcatctgcccaatatccag
tctctcaaggaggctcttgctaaggcccgagcatggattgctgatgtggatgagatccaa
aatggtgaccactacccttgtttggatgacttggagggccttgtggctgtgggtcgggac
ctccctgtggggctggaggaactgagacagctagagctgcaggtactgacagcacactcc
tggagagaaaaggcctccaagaccttcctcaagaagaactcctgctacactttattggag
gtgctctgcccgtgtgcagacgccggctcagacagcaccaaacgcagccggtggatggag
aaggagctggggttgtacaaatctgacacagagctgttggggctgtctgcgcaggacctc
agggacccaggctctgtgatcgtggccttcaaagagggggagcagaaggagaaggaaggg
atcctacagcttcgtcgtaccaactcagccaagccaagtccactggcatcgttgacaaca
aactcgtctacagcttctatctgcgtgtgtgggcaagtgccagctggggtgggagctctg
cagtgtgacctgtgtcaggactggttccatgggcgctgtgtgacagtaccccgcctcctc
agctcccagaggtccagtcttacctcatccccactgctggcctggtgggaatgggacacc
aaattcttgtgccctctgtgtatgcgctcacggcgcccacgcttggaaaccatcctggca
ctgctggtagccctacagagactgcctgtacggctgcctgagggtgaggctctacagtgc
ctcacagagagagccatcagctggcaaggccgtgccaggcaggttttggcctctgaggaa
gtgactgctctgttgggacggctggctgaactccgccaacggctacaggctgaatccaag
cctgaggaatccctggcctactcttcagatggtggagatggcactggcaatatgcctaag
gtccaggggctgttggagaatggggacagtgtgaccagtcctgaaaaggtagccacagag
gagggctcaggtaagagagatctggagctgctatcctcgctattaccacagttgactggc
cctgtgttggaactgcctgaggcaacccgagccccactagaggaacttatgatggaaggg
gatctgcttgaggtgaccttagatgagaatcatagcatctggcagctgctgcaggctggg
cagcctccagacttgaagagggtccagacacttctggagctggagaaggcagagcgccat
gggagtcggacacgaggccgagccctagagaggagacggcggaggaaggtggatcggggt
ggggagcccgatgatccggcacgagaggagctagagccaaagagggtacggagctcagga
ccagaagccgaggaagtccaggaggaagaggagctggaggaggagactgggggtgaggtc
cctcctgtacccttccccaacaatggcagtcccagcacccaggaggaccaggatggctta
gaaccagtgttagacgctggttctgacacctcagcccctttctctactctgacttcccgg
ctgttgatgtcctgcccacagcagccatctctgcaacaattgtga

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