KEGG   Rattus norvegicus (rat): 366276
Entry
366276            CDS       T01003                                 
Symbol
Prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
  KO
K12855  pre-mRNA-processing factor 6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    366276 (Prpf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    366276 (Prpf6)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    366276 (Prpf6)
 Complex C
   U5 SnRNP specific factors
    366276 (Prpf6)
SSDB
Motif
Pfam: PRP1_N TPR_14 TPR_19 TPR_16 TPR_17 Suf FAT
Other DBs
NCBI-GeneID: 366276
NCBI-ProteinID: NP_001073234
RGD: 1307103
Ensembl: ENSRNOG00000051498
UniProt: A1A5S1
Position
3:168706952..168771191
AA seq 941 aa
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMKGQIEE
QGELMERAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCAVSKDITNWQRKIGEILVLVAARIKNTF
NT seq 2826 nt   +upstreamnt  +downstreamnt
atgaacaagaagaagaagccgttcctgggcatgcccgcgccgctgggctacgtaccgggg
ctgggccggggtgccacaggcttcaccacccgatcagacattgggcctgctcgggatgca
aacgaccctgtggacgaccgccatgccccaccagggaagagaactgtgggggaccagatg
aagaaaaaccaggctgctgatgacgatgatgaggatctgaacgataccaactacgatgag
tttaatggctatgctggaagcctcttctcaagtgggccctatgaaaaagatgatgaggaa
gcagatgctatttacgcagctctggataagaggatggatgagagaagaaaagagagaaga
gagcaaagggaaaaagaagagattgagaaataccgaatggaacgtcccaaaatccagcag
cagttttcagaccttaagaggaagttggcagaggtcacagaagaagaatggcttagcatc
ccagaagttggcgatgccagaaacaaacgtcaacggaacccacgttatgagaagctgacc
cctgttcctgatagtttctttgccaaacatttacagactggagagaaccatacttccgtg
gatccccgacaaactcaatttggaggtctgaatactccctacccaggaggcctgaacact
ccatacccaggtggaatgacaccaggattgatgacacctggaacaggggagctggacatg
aggaagattggccaggccaggaataccctgatggacatgaggcttagccaggtatctgac
tcagtgagtgggcagactgttgtggaccccaaaggctatctgacggacctaaactctatg
atcccaacccatggtggcgatataaatgacatcaagaaagcacgactacttcttaaatct
gttcgagaaacaaaccctcatcatccaccagcctggattgcgtcagctcgcctggaagaa
gtcactggaaagttacaagtggctcgaaaccttattatgaaagggacagagatgtgcccc
aagagtgaagatgtctggctagaagcagctaggttacagcctggggacacagccaaggct
gtggtggcacaagctgtccgtcatctcccacagtctgttaggatttacattagagcagca
gaactagaaacagacattcgagcaaagaagcgtgttcttcggaaagcccttgagcatgtt
ccaaactccgttcgattgtggaaagcagctgttgagcttgaagagcctgaagatgctaga
atcatgctgagccgagcagtagagtgctgtcccaccagtgtagagctctggcttgctttg
gcaaggctggaaacttatgaaaatgctcgaaaggtcttaaataaagcacgtgagaacatt
cctacagatcggcacatctggatcaccgctgccaagcttgaggaggccaatgggaacact
cagatggtggagaagatcattgaccgagccatcacgtctcttcgggccaatggtgtagag
attaatcgcgaacagtggatccaggatgctgaggagtgtgacagggcagggagtgtggcc
acgtgccaggccgtcatgcgtgctgtgatcggtatcgggatagaggaggaagatcgcaaa
cacacctggatggaagacgctgacagttgtgtggcccacaatgccctggagtgtgcacga
gccatatatgcctatgccctacaagtcttccccagcaagaaaagtgtgtggttacgagct
gcatactttgagaagaaccatggtaccagggagtctttggaagcgctcttgcagagggct
gtggcccactgccccaaggcagaggtgctgtggctcatgggtgccaagtcgaagtggctg
gcaggggatgtccctgcagcaagaagcatcctggccctggcctttcaggccaaccccaac
agcgaagagatctggctggcggctgtgaagctggagtcagagaacaatgagtacgagcga
gcccggaggctgctggccaaggcccggagcagcgcacccaccgcccgtgtgttcatgaag
tctgtgaagctggagtgggtgctggggaacatcactgccgcacaggagctgtgcgaggag
gctctgaggcactatgaagatttccccaagctgtggatgatgaaggggcagattgaggag
caaggagagctgatggagagggcccgggaggcctacaaccaggggttgaagaaatgtcct
cactccacgccactgtggctcttgctttcccggctagaggaaaagattgggcagctgact
cgtgctcgggccattttagagaaatctcgtctgaaaaacccaaagaaccctgggctgtgg
ttggagtcagtgcggctggagtaccgggcagggctgaagaatattgccaataccctcatg
gccaaggcgctgcaggagtgccctaactctggtatcctgtggtctgaagctgtcttcctt
gaggcaaggccccagagaaagaccaagagtgtggatgccctgaagaagtgtgaacatgac
ccccatgtgcttttagctgtggctaagctgttctggagtgaaagaaagatcaccaaggct
cgggagtggttccatcgcaccgtgaagattgattcagatctgggggatgcctgggccttc
ttctacaaatttgaactacagcatggcactgaggagcaacaggaagaggtgaggaaacgc
tgtgagaatgcagagccccgacatggagagctgtggtgtgctgtgtccaaggatatcacc
aactggcagagaaagattggggaaatcctagtgctggtggccgcccgtatcaaaaacacc
ttctga

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