KEGG   Rattus norvegicus (rat): 65277
Entry
65277             CDS       T01003                                 
Symbol
Vti1a
Name
(RefSeq) vesicle transport through interaction with t-SNAREs homolog 1A
  KO
K08493  vesicle transport through interaction with t-SNAREs 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04130  SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04130 SNARE interactions in vesicular transport
    65277 (Vti1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    65277 (Vti1a)
Membrane trafficking [BR:rno04131]
 SNARE
  SNAP-25[N] (Qb)
   Vti1
    65277 (Vti1a)
SSDB
Motif
Pfam: V-SNARE V-SNARE_C LMBR1 Sec20 Laminin_II Peptidase_S46 Mer2 Fusion_gly DUF5344 FapA Exonuc_VII_L SKA2 Orf78
Other DBs
NCBI-GeneID: 65277
NCBI-ProteinID: NP_075589
RGD: 621490
Ensembl: ENSRNOG00000042786
UniProt: Q9JI51 A6JHZ7
Structure
Position
1:264361538..264667171
AA seq 217 aa
MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR
EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDAGNSSENQRAHLLD
NTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRI
LTGMLRRIIQNRILLVILGIIVVITILTAITFFVRGH
NT seq 654 nt   +upstreamnt  +downstreamnt
atgtcagccgacttcgaagggtacgagcaggacttcgcagtgctcactgctgagatcacc
agcaagatttccagggtccctcgactccctcccgatgagaagaagcaaatggttgccaac
gtggagaaacagctcgaagaggccagagaactgctcgaacagatggacttggaagttcga
gaaatcccaccccaaagtcgaggaatgtacagcaacagaatgaggagctacaagcaagaa
atggggaaactggaaacggattttaaaaggtcacggatcgcctacagtgacgaagtacgg
aatgagctcctaggggatgctgggaattcctcagagaaccagagggcacatctgctggat
aacacggaaaggctggagaggtcatctcggagactagaggctggataccagatagcagtg
gagaccgagcaaatcggccaagagatgttggaaaacctgagtcatgacagagagaggata
cagcgggcacgtgagcgactccgggaaacagatgcaaacttggggaagagctctcggatt
ctgactgggatgttgcgaagaatcatccaaaaccgcatcctgctcgtcatcctggggatc
atcgtggtcatcaccatcctgacggccatcactttttttgtcagaggacactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (23)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (20)   
DNA sequence (26)   
   RefSeq(nuc) (20)   
   GenBank (3)   
   EMBL (3)   
3D Structure (1)   
   PDB (1)   
Protein domain (13)   
   Pfam (13)   
All databases (73)   

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