KEGG R.norvegicus: 84349

Rattus norvegicus (rat): 84349

Entry

84349 CDS R.norvegicus

Gene name Cd40lg

Definition CD40 ligand

Orthology K03161 tumor necrosis factor (ligand) superfamily, member 5

Pathway rno04060 Cytokine-cytokine receptor interaction
rno04514 Cell adhesion molecules (CAMs)
rno04660 T cell receptor signaling pathway
rno04672 Intestinal immune network for IgA production
rno05310 Asthma
rno05320 Autoimmune thyroid disease
rno05322 Systemic lupus erythematosus
rno05330 Allograft rejection
rno05340 Primary immunodeficiency
rno05416 Viral myocarditis

Class Environmental Information Processing; Signaling Molecules and
Interaction; Cytokine-cytokine receptor interaction [PATH:rno04060]
Environmental Information Processing; Signaling Molecules and
Interaction; Cell adhesion molecules (CAMs) [PATH:rno04514]
Organismal Systems; Immune System; T cell receptor signaling pathway
[PATH:rno04660]
Organismal Systems; Immune System; Intestinal immune network for IgA
production [PATH:rno04672]
Human Diseases; Immune System Diseases; Asthma [PATH:rno05310]
Human Diseases; Immune System Diseases; Systemic lupus erythematosus
[PATH:rno05322]
Human Diseases; Immune System Diseases; Autoimmune thyroid disease
[PATH:rno05320]
Human Diseases; Immune System Diseases; Allograft rejection
[PATH:rno05330]
Human Diseases; Immune System Diseases; Primary immunodeficiency
[PATH:rno05340]
Human Diseases; Circulatory Diseases; Viral myocarditis
[PATH:rno05416]

SSDB

Motif Pfam: TNF
PROSITE: TNF_1 TNF_2

Other DBs NCBI-GI: 16758076
NCBI-GeneID: 84349
RGD: 708418
RATMAP: ENSRNOG00000000871
Ensembl: ENSRNOG00000000871
UniProt: Q9Z2V2

Position Xq36

AA seq 260 aa
MIETYSQPSPRSVATGLPASMKIFMYLLTVFLITQMIGSVPFAVYLHRRLDKVEEEASLH
EDFVFVKKLKRCNKGEGSLSLLNCEEMRRQFEDLVKDISLNKEEKKEKSFEMQRGDEDPQ
IAAHVVSEANSNAASVLQWAKKGYYTMKSNLVVLENGRQLTVKREGLYYVYTQVTFCSNR
EPLSQRPFIVSLWLKPSSGSERILLRAANTHSSSKLCEQQSIHLGGVFELQAGASVFVNV
TEASQVIHGIGFSSIGLLKL

NT seq 783 nt +upstreamnt +downstreamnt
atgatagaaacatacagccaaccttctcccagatctgtggctactgggcttccagcgagc
atgaagatttttatgtatttacttactgtttttcttatcacccagatgattgggtcggtg
ccttttgctgtgtatcttcatagaagattggataaggtagaggaggaagcaagccttcac
gaggattttgtattcgtaaaaaagctaaagaggtgcaacaaaggagaagggtccttatcc
ttgctcaactgtgaggagatgagaaggcaatttgaagaccttgtcaaggatatatcgtta
aacaaagaagagaaaaaagaaaagagctttgaaatgcaaagaggtgatgaggatcctcaa
attgcagcacatgttgtaagtgaggccaacagtaatgcagcatctgttcttcagtgggcg
aagaaaggatattataccatgaaaagcaacttggtagtgctggaaaatgggagacaactg
acggttaaaagagaaggactctattatgtctacacccaagtcaccttctgctctaatcgg
gaacctttgagtcaacgtccattcatcgtcagcctctggctgaagcccagcagtgggtca
gagagaatcttactcagggcagcgaatacccacagttcctccaagctttgtgagcaacag
tccattcacttgggcggagtatttgaattacaagcaggtgcttctgtgtttgtcaacgtg
actgaagcaagccaagtgatccacggaattggcttctcatctattggcttactcaaactc
tga

All links

Pathway (10)   
   KEGG PATHWAY (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UNIGENE (1)   
   ENSEMBL-RNO (1)   
   RATMAP-RNO (1)   
   RGD-RNO (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (1)   
   IPI (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (1)   
   PROSITE (2)   
All databases (28)

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