KEGG T01003: 84580

Rattus norvegicus (rat): 84580

Entry

84580 CDS T01003

Gene name

Hdac5

Definition

histone deacetylase 5 (EC:3.5.1.98)

Orthology

K11406

histone deacetylase 4/5 [EC:3.5.1.98]

Organism

rno Rattus norvegicus (rat)

Pathway

rno05034	Alcoholism
rno05169	Epstein-Barr virus infection
rno05203	Viral carcinogenesis

Class

Human Diseases; Cancers; Viral carcinogenesis [PATH:rno05203]
Human Diseases; Substance dependence; Alcoholism [PATH:rno05034]
Human Diseases; Infectious diseases; Epstein-Barr virus infection [PATH:rno05169]

SSDB

Motif

Pfam:

Hist_deacetyl HDAC4_Gln Arb2

Other DBs

NCBI-GI:

NCBI-GeneID:

RGD:

Ensembl:

Position

10q32.1

AA seq 1113 aa
MNSPNESDGMSGREPSLEILPRTPLHSIPVAVEVKPVLPAAMPSSMGGGGGGSPSPVELR
GALAGPMDPALREQQLQQELLVLKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQ
QEMLAAKRQQELEQQRQREQQRQEELEKQRLEQQLLILRNKEKSKESAIASTEVKLRLQE
FLLSKSKEPTPGGLNHSLPQHPKCWGAHHASLDQSSPPQSGPPGTPPSYKLPLLGPYDSR
DDFPLRKTASEPNLKVRSRLKQKVAERRSSPLLRRKDGTVISTFKKRAVEITGTGPGVSS
VCNSAPGSGPSSPNSSHSTIAENGFTGSVPNIPTEMLPQHRALPLDSSPNQFSLYTSPSL
PNISLGLQATVTVTNSHLTASPKLSTQQEAERQALQSLRQGSTLTGKFMSTSSIPGCLLG
VALEGDTSPHGHASLLQHVLLLEQARQQSTLIAVPLHGQSPLVTGERVATSMRTVGKLPR
HRPLSRTQSSPLPQSPQALQQLVMQQQHQQFLEKQKQQQMQLGKILTKTGELSRQPTTHP
EETEEELTEQQEALLGEGALTMPREGSTESESTQEDLEEEEDEEEDEEDCIQVKDEDGES
GPDEGADLEESSAGYKKLFADAQQLQPLQVYQAPLSLATVPHQALGRTQSSPAAPGSMKS
PTDHPTVVKHLFTTGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCER
IRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSD
TVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVA
ITAKLLQQKLSVGKVLIVDWDIHHGNGTQQAFYDDPSVLYISLHRYDNGNFFPGSGAPEE
VGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGH
LSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQP
LDEAVLQQKPSVNAVATLEKVIEIQSKHWSCVQRFATGLGCSLREAQTGEKEEAETVSAM
ALLSMGAEQAQAAATQEHSPRPAEEPMEQEPAL

NT seq 3342 nt +upstreamnt +downstreamnt
atgaactctcccaacgagtcggatggcatgtcaggccgggaaccatccttggaaatcttg
ccacggactcctctgcacagcatccctgtggcagtggaggtgaagccggtgctgccagca
gccatgcccagctccatgggaggtggaggtggaggtagccccagccctgtggagcttcgg
ggggctctggcaggccccatggaccccgcgcttcgggagcagcaactgcagcaagagctc
ctggtgctcaagcagcagcagcagctgcaaaagcagctcctgtttgccgagtttcagaag
cagcacgaccacctgacgcggcagcatgaagtccagctgcagaagcacctcaagcagcag
caggagatgctggcggctaagaggcagcaggagctggagcagcagcggcagcgcgagcag
cagcggcaagaggagctagagaaacagcggctggagcagcagctgcttattctacgaaac
aaggagaagagcaaagagagtgccatcgccagcaccgaggtaaagctgaggctccaggaa
ttcctgttgtccaagtcaaaggagcccacaccaggcggcctcaaccattccctcccacag
caccccaaatgctggggagcccatcatgcttctttggaccagagttcccctccccagagc
ggccctcctgggacgcctccctcctacaaattgcctttgcttgggccctatgacagccgt
gatgactttcccctccgtaaaacggcctcggaacccaacttaaaagtacgttcaaggcta
aaacagaaggtagctgagagaagaagcagtcccctcctgcgtcgaaaggatggcactgtt
attagtacttttaagaagagagcagtcgagatcacaggcacagggcctggggtgtcgtcc
gtgtgtaacagtgcgcctggctctggccccagctctcccaacagttcccacagcaccatc
gctgagaacggctttactggctcagtccccaacatccccactgagatgctcccccagcac
cgggccctccctctggacagttccccaaaccagttcagcctctacacgtctccttctctg
cctaacatctccctagggctgcaggccactgtcactgttaccaactcgcacctcaccgcc
tccccgaagctgtcgacacagcaggaggctgagaggcaggcccttcagtccctgcggcag
ggcagcacactgaccggcaagttcatgagcacatcctccatccctggctgcctgctggga
gtggccctggagggcgacacgagcccccatgggcacgcttccctgctgcagcacgttttg
ctgctggagcaggcccggcaacagagcacgctcatagcggtgccactccatgggcagtcc
ccactggtgacgggtgaacgtgtggccaccagcatgaggacagtgggcaagctcccaagg
caccgacctctgagccgtactcagtcctcgcccctgccgcagagtccccaggccctgcag
cagctggttatgcagcagcagcaccagcagttcctagagaaacagaagcagcagcagatg
cagctgggcaagatccttaccaaaactggggagctgtcaaggcagcccaccacccaccct
gaagagacagaggaggagctgacggaacagcaggaggccttgctgggggagggggccctg
accatgccccgggaaggttctacagagagcgagagcacccaggaagatctagaagaggaa
gaggatgaggaggaggacgaggaggactgcattcaggtcaaggatgaggatggcgagagt
ggtcctgatgagggcgcagacttggaggagtccagtgctggttacaaaaagttgttcgca
gatgcccagcagttacagcccctccaggtataccaggcacccctcagcctggccactgtg
cctcatcaggccctgggccgcacccagtcctcacctgctgctcctgggagcatgaagagc
cccacagaccaccccactgtggtgaagcacctcttcaccacaggtgtggtctatgacacg
ttcatgctgaagcatcagtgtatgtgcggaaacacacatgtgcacccagagcacgccggc
cgcatccagagcatctggtcccggctgcaggaaactggtctgctcagcaagtgtgagcgg
atccggggtcgtaaagccacactggatgaaatccagaccgtgcactctgagtaccacacc
ctgctctatgggaccagtccccttaaccggcagaagctggacagtaagaagctgcttggc
cccatcagccagaagatgtacgccatgctgccttgtgggggcattggggtggacagtgac
actgtgtggaatgagatgcactcctctagtgccgtgcgaatggcagtgggctgcctggtg
gagctggccttcaaggtggctgcaggagagctcaagaatggatttgccatcatccgaccc
ccaggacatcatgctgaggagtccacagccatgggattctgcttcttcaactccgtagcc
atcacagctaaactcctgcagcagaagctgagcgtgggcaaggtcctcatcgtggactgg
gacattcaccacggcaatggcacccagcaagcattttacgatgacccctccgtgctctac
atctctttgcatcgctacgacaatgggaacttctttccaggctccggggctcctgaagag
gttggtggagggccaggtgtggggtacaacgtaaatgtggcgtggacaggaggtgtggat
ccccccattggagatgtggaatacctgacagccttcaggacagtagtgatgcccattgcc
cacgagttctcacccgacgtcgttctagtctccgctgggtttgatgctgttgaaggacat
ctgtctccactgggtggctattctgtcaccgccagatgttttggccacttgaccaggcag
ctcatgacactggcagggggccgggtggtgctggccctggagggaggtcatgacttgacc
gccatctgtgatgcttctgaggcctgtgtctcggctctgctcagcgtggagctgcagccc
ttggatgaagcagtcttgcagcaaaagcccagcgtcaatgcagttgccacactagagaaa
gtcatcgagatccagagcaaacactggagctgtgtacagaggtttgccactggtctgggc
tgctcgctgcgggaggctcagacgggtgagaaagaggaggccgagactgtgagcgccatg
gccctgctttccatgggggctgagcaggcccaggctgctgccactcaagagcacagcccc
cggccagccgaggagcccatggagcaggagcctgccctgtga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (4)   
   UniGene (1)   
   ENSEMBL-RNO (1)   
   OC (1)   
   RGD (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

Download RDF

DBGET integrated database retrieval system