KEGG T03071: Pd630

Rhodococcus opacus PD630: Pd630_LPD03321

Entry

Pd630_LPD03321    CDS       T03071

Name

(GenBank) Polyribonucleotide nucleotidyltransferase

K00962

polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]

Organism

roa Rhodococcus opacus PD630

Pathway

roa03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:roa00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Pd630_LPD03321
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:roa03019]
    Pd630_LPD03321
   03016 Transfer RNA biogenesis [BR:roa03016]
    Pd630_LPD03321
Enzymes [BR:roa01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Pd630_LPD03321
Messenger RNA biogenesis [BR:roa03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Pd630_LPD03321
Transfer RNA biogenesis [BR:roa03016]
Prokaryotic type
  tRNA degradation factors
   Pd630_LPD03321

SSDB

Motif

Pfam:

RNase_PH PNPase S1 KH_1 RNase_PH_C KH_2 KhpA-B_KH

Other DBs

NCBI-ProteinID:

AHK30540

Position

3512727..3515000

AA seq 757 aa
MTENSAVEVDEGVFESTAVIDNGSFGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATS
ASKHPKEHFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVD
GLRNEIQVVVTVMSLNPQDLYDVVAINAASASTQIAGLPFSGPVGGVRVALITSDENKAG
QWVAFPTVEQLENAVFDMVVAGRIVSGSGDDADVAIMMVEAEATDNVISLIDGGAQAPTE
AIVAEGLEAAKPFIARLCTAQQQLAAKASKPTGDFPVFPAYQDDVFAAVEAAAAEKLSAA
LTIAGKQERDDKTDEVKVEVLEQVAPNFEGREKELGAAFRSLTKKLVRQRILRDQFRIDG
RGITDIRSLSAEVAIVPRAHGSALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMH
HYNFPPYSTGETGRVGSPKRREIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGST
SMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFK
VAGTKDFVTALQLDTKLDGIPSKVLAGALSQAKDARATILEVMAEAIDTPDEMSPFAPRV
TAIKVPVDKIGEVIGPKGKMINSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAI
ANPQLPKVGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVSVGSKL
RVEIADIDNRGKISLIPVEEDGAAAPAEQSEEAAAEK

NT seq 2274 nt +upstreamnt +downstreamnt
atgacagagaattccgcagtagaggtcgatgagggcgtgttcgaatccaccgccgtgatc
gacaacgggtccttcggaacccgcaccattcgtttcgagaccggtcgcctcgcgcagcag
gccgccggcgccgtcgtcgcctacctggacgacgagacgatgctgctgtccgcgacgagc
gccagcaagcaccccaaggagcacttcgacttcttccccctgacggtggacgtcgaggag
cgcatgtacgcggcgggccgtatccccggctcgttcttccgtcgtgagggccgtccctcc
acggacgcgatcctgacctgccgcctgatcgaccgcccgctgcgcccgtcgttcgtcgac
ggtctgcgcaacgagatccaggtcgtcgtcacggtgatgagcctgaacccgcaggacctg
tacgacgtggtcgcgatcaacgcggcgtccgcctccacccagatcgcgggattgccgttc
tccggacccgtcggcggtgtgcgcgtcgcgctcatcacgtcggacgagaacaaggccggc
cagtgggttgcattccccaccgtcgagcagctcgagaacgccgtcttcgacatggtcgtc
gcgggccgcatcgtctccggcagcggtgacgacgccgacgtcgcgatcatgatggtcgag
gccgaggccaccgacaacgtgatctccctgatcgacggtggcgcacaggctcccaccgag
gcgatcgtggccgagggcctcgaggccgccaagccgttcatcgcccgcctctgcaccgcg
cagcagcagctcgcggccaaggcctccaagccgaccggtgacttccccgtcttcccggcg
taccaggacgacgtgttcgcagccgtcgaggccgccgcagcggagaagctcagcgcggca
ctgaccatcgcgggcaagcaggaacgcgacgacaagaccgacgaggtcaaggtcgaggtc
ctcgagcaggtcgccccgaacttcgagggtcgcgagaaggaactgggcgcggcgttccgc
tcgctgacgaagaagctggtccgtcagcgcatcctgcgcgaccagttccgcatcgacggc
cgtggcatcacggacatccgttcgctgtcggctgaggtcgccatcgttccgcgtgcacac
ggttccgctctgttcgagcgcggcgagacccagatcttgggtgtcaccaccctcgacatg
gtgaagatggcgcagcaggtcgattcgctcggacccgagacgaccaagcggtacatgcat
cactacaacttcccgccgtactccaccggtgagacgggacgcgtcggttcgccgaagcgc
cgcgagatcggtcacggcgcgctggcggagcgggcactcatgcccgtgctgcccagcgtc
gaggaattcccgtacgccatccgccaggtctcggaggctctcagctccaacggctccacc
tcgatgggctccgtgtgcgcgtcgacgctcgcactgctcaacgccggtgtgccgctgaag
gctccggtcgcgggcatcgccatgggcctggtctccgaccaggtcgacggtgagacccgc
tacgtcgcgctcaccgacatcctcggtgccgaggacgcgttcggcgacatggacttcaag
gtcgcgggcacgaaggacttcgtcacggccctgcagctcgacacgaagctcgacggcatc
ccgtccaaggtcctcgccggcgcgctgtcgcaggccaaggacgcgcgtgcgacgatcctc
gaggtcatggccgaggccatcgacacccccgacgagatgagcccgttcgccccgcgcgtc
acggccatcaaggtcccggtcgacaagatcggtgaggtcatcggccccaagggcaagatg
atcaactccatcaccgagcagaccggcgccaacatctccatcgaagatgacggcaccgtg
ttcgtcggtgcgacggacggcccgtccgcgcaggccgcgatcgacatgatcaacgccatc
gccaacccgcagcttccgaaggtcggcgagcgcttcctgggcacggtcgtcaagaccacc
gccttcggtgcgttcgtgtcgctcctccccggccgcgacggattggtgcacatctcgaag
ctgggcagcggtaagcgcattgccaaggtcgaggacgtcgtgagcgtcggctcgaagttg
cgtgtcgagatcgccgacatcgacaaccgtggcaagatctcgctgatccccgtcgaagaa
gacggcgctgcggctccggccgagcagagcgaagaggcggctgccgagaagtag

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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