KEGG T03071: Pd630

Rhodococcus opacus PD630: Pd630_LPD05062

Entry

Pd630_LPD05062    CDS       T03071

Name

(GenBank) UvrABC system protein B

K03702

excinuclease ABC subunit B

Organism

roa Rhodococcus opacus PD630

Pathway

roa03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:roa00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Pd630_LPD05062
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD05062
DNA repair and recombination proteins [BR:roa03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pd630_LPD05062
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Pd630_LPD05062

SSDB

Motif

Pfam:

UvrB_inter UvrB Helicase_C ResIII DEAD UVR AAA_22 AAA_16 AAA_19 AAA_5 UPF0730 DUF87 UvrD-helicase Helicase_RecD DUF5937 AAA_7 Apolipoprotein AIG1

Other DBs

NCBI-ProteinID:

AHK32270

Position

complement(5247685..5249823)

AA seq 712 aa
MVAHSEFRPIGDIERSEARFEVVSDHKPAGDQPTAIADLERRINAGEKDVVLLGATGTGK
SATTAWLIEKVQRPTLVMAPNKTLAAQLANELRDMLPNNSVEYFVSYYDYYQPEAYIAQT
DTYIEKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGV
EVPRDALLRLLVDVQYTRNDLAFTRGSFRVRGDTVEIIPSYEELAVRIEFFGDEIEALYY
LHPLTGDVVRKVDSVRIFPATHYVAGPERMERAVKDIEAELEERLADLENKGKLLEAQRL
RMRTQYDLEMIKQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQ
IGAMYEGDMSRKRNLVEFGFRLPSATDNRPLTWEEFTQRIGQTVYLSATPGKYELGQAGG
EFVEQVIRPTGLVDPQVVVKPTKGQIDDLVHEIRERADRDERVLVTTLTKKMAEDLTDYL
LELGIRVRYLHSDIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKE
GFLRSSTSLIQTIGRAARNVSGQVHMYADKITDSMQHAIEETERRREKQIAYNEKMGVDP
QPLRKKIADILDQVYEEAEDTASGVDVGGSGRNATRGRRAQGEAGRSVSAGVYEGRDTKS
MPRAELADLVKELTDQMMNAARDLQFELAGRLRDEIADLKKELRGMDAAGLK

NT seq 2139 nt +upstreamnt +downstreamnt
gtggtggcacattccgagttccgtcccatcggggatatcgagcggtcggaagcgcggttc
gaggtggtcagcgaccacaagccggccggcgaccagcccaccgcgatcgccgatctggaa
cgccgtatcaacgccggtgagaaggacgtggtcctgctcggcgccaccggtacgggcaag
tccgcgaccacggcgtggctgatcgagaaggtgcagcggcccaccctggtgatggcgccg
aacaagacgctcgccgcgcagttggccaacgagctgcgcgacatgctgcccaacaactcg
gtggagtacttcgtctcgtactacgactactaccagcccgaggcgtacatcgcgcagacc
gacacctacatcgagaaggactcgtcgatcaacgacgacgtcgagcgactgcgccactcg
gcgacgtcgagcctgctctcgcggcgggacgtggtcgtggtggcgtccgtgtcgtgcatc
tacggcctcggcaccccgcagtcgtacctcgaccggtcggtgcagctcgaggtcggtgtg
gaggttccgcgcgacgctctgctgcggctgctggtcgacgtgcagtacacccgcaacgat
ctggcgttcacccgcggatccttccgggtgcgcggcgacaccgtcgagatcattccctcg
tacgaggagctggcggtccggatcgagttcttcggcgacgagatcgaggcgctgtactac
ctgcatcccctcaccggggacgtggtgcggaaggtcgactcggtgcgcattttcccggcc
acgcactacgtcgcgggtcccgagcggatggaacgcgccgtcaaggacatcgaagccgaa
ctcgaggaacggctcgccgacctcgagaacaagggcaagctgctcgaggcgcagcgtctc
cggatgcgcacccagtacgacctcgagatgatcaagcaggtcgggttctgctccggcatc
gagaactactcgcgtcacatcgacggtcgtggaccgggcactgcgcccgccacgctcatc
gactacttcccggaagacttcctcctcgtcatcgacgagtcccacgtgacggtcccgcag
atcggcgcgatgtacgagggcgacatgtcgcgcaagcggaacctcgtcgagttcgggttc
cggttgccgtccgccaccgacaaccgtccgctgacgtgggaggagttcacccagcgcatc
gggcagacggtgtatctgtcggccacacccggcaagtacgagctggggcaggccggcggg
gagttcgtcgagcaggtcatccgccccaccggtctcgtcgacccccaggtggtcgtcaaa
ccgaccaaggggcagatcgacgacctcgtgcacgagatccgcgaacgcgcggaccgggac
gagcgcgtcctcgtcaccacgttgacgaagaagatggcggaagatctcaccgactacctc
ctcgagctcggtatccgggtgcggtacctgcactcggacatcgacacgctgcgacgggtc
gagctgctccggcagctccggctgggggagtacgacgttctggtgggtatcaacctgctg
cgtgagggcctcgaccttcccgaggtgtcgttggtcgccatcctcgacgccgacaaggag
gggttcctccggagctcgaccagcctcatccagacgatcggccgtgcggctcgtaacgtg
tccggccaggtccacatgtacgccgacaagatcaccgactcgatgcagcacgcgatcgag
gagaccgagcggcggcgtgagaagcagatcgcctacaacgagaagatgggcgtcgatccg
caaccgctgcggaagaagatcgcggacatcctcgaccaggtctacgaggaagccgaggac
acggccagcggagtcgacgtcggcggttccggacgcaacgccacccgcgggcgccgtgcg
cagggcgaggccgggcgctcggtcagcgccggggtgtacgagggtcgtgacacgaagtcg
atgcccagggcggagttggcggacctggtcaaggaattgactgatcagatgatgaacgcc
gcccgtgatctgcagttcgaactcgccggacgactgcgcgacgagatcgccgacctgaag
aaggaactgcgcggaatggacgccgcgggcctgaaatag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (18)   
   Pfam (18)   
All databases (25)   

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