KEGG T00882: ROP

Rhodococcus opacus: ROP_10360

Entry

ROP_10360 CDS T00882

Definition

ribonuclease (EC:3.1.-.-)

Orthology

K08300

ribonuclease E [EC:3.1.26.12]

Organism

rop Rhodococcus opacus

Pathway

rop03018

RNA degradation

Class

Genetic Information Processing; Folding, sorting and degradation; RNA degradation [PATH:rop03018]

SSDB

Motif

Pfam:

RNase_E_G IF2_N S1

Other DBs

NCBI-GI:

NCBI-GeneID:

NITE:

UniProt:

Position

complement(1081019..1084351)

AA seq 1110 aa
MADQAPPTNSEPNDTATAGSAVPALPEKIRVHALAKLLGVTSKQVIAEAAALGLELRSAQ
SSLQRDIAERVYAGFTAAETAPAESAETAPPESAAEAAPEAPAPAAETVAEVAPEPVAAP
QAAEEAPAEEAPAAESPEPVAEEAAVSEPDLGHLFTTADFPAESPAAEEPAETPAVSQVP
LFLQPDLAAVETPPRRRRSRRDAGTPEPTTEQPPVAESREDVAEPAKAADTGTADTESDE
SDVDGDQPRRRRRGRRGRGRGRGEQPNEQDTDTDTEGAEAEESAREDKGREEKGAETPSR
EPEEPKKESEEKPADAEQAEAESGDEETGEGDSDGSSRRRRRRRRRKSGGEGSGDATSED
DPPNTVVHEREPRNKSRSKDEVQGITGSTRLEAKRQRRRDGRDAGRRRPPILTESEFLAR
REAVDRVMVVRDRVVSGQPHATTQVAVLEDGVLVEHFVTTSASASMVGNVYLGRVQNVLP
SMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSKDPVGHKGA
RLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKDILRDIVPSDAGVIIRTASEGVS
EEELARDVTRLQEQWAGIEAQAAKAESGKSGNPQALYEEPDLLVKVIRDLFNEDFSKLVI
EGEKAWSTVESYIQSVAPDLMPRLKQHTSDNGVDVFEAHRIDEQLAKALDRKVWLPSGGT
LVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFID
MVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHG
RGIIVHAEPIEVKTSEDAGARGSSRGGDSGGSRKKRGRDKSSGGDTSQGSAHEETPAVDA
TVKRAHPVALAMAHHHHEEETRAAETPAAGKDLPGIEEAVAEAPAAVAAEAVVAPEAEVA
VVEEAVVEVAVEAVAEAPVVEAAPAEEAPVEAASVAETPEPVVERAPEPAPEPEPAPEPV
APTRRRSRRVSRAAAAPVSETPSAGTVFVIPTPEPGAEHAPEPEPAMSASTAHGPAASSP
DGADPQAAPRKPRRRRAAARPAGPPVDADH

NT seq 3333 nt +upstreamnt +downstreamnt
gtggccgatcaagcgccgcccacaaattcagagccgaacgatacggccaccgccgggagc
gcggttcccgctcttccggagaaaattcgcgttcacgccctcgcgaagttgctcggcgtg
acgagcaagcaggtcatcgccgaggccgcggccctcggtttggaactgcgcagcgcgcag
tcgagcctgcaacgcgacatcgccgagcgggtgtatgccggattcaccgctgcggaaacc
gcacctgccgagtctgcggagaccgctcctcccgagtcggccgccgaggctgcaccggaa
gcgccggccccggccgcggagacggttgccgaggtcgctccggagccggttgcggctccc
caggccgccgaggaagcccccgccgaggaagcccctgccgcggagagcccggaacccgtc
gccgaggaggccgcggtttccgaacccgacctcgggcacctgttcaccaccgccgacttc
ccggccgagtcgcccgctgccgaggagcccgccgagactcccgccgtttcccaggtcccg
ctcttcctgcagcccgacctcgcggcggtcgagacgccgccgcgtcgccggcgcagtcgc
cgggacgccggaacgcccgaacccaccaccgagcagccgcccgtcgccgagtcgcgcgag
gacgtcgccgagcccgcgaaggccgcggacaccggaaccgccgacaccgaatcggacgag
tccgacgtcgacggcgatcagccgcgccgtcgccgtcgcggccgccgtggccgtggccgc
ggacggggtgagcagccgaacgagcaggacaccgataccgacaccgagggtgccgaggcc
gaggagtccgcgcgcgaggacaagggccgcgaagagaagggtgcggagacaccgagccgg
gagcccgaagagccgaagaaggagtccgaggagaagcccgcggacgccgagcaggcggaa
gcggagtccggggacgaagagaccggtgagggtgactccgacggttcgagccgtcgccgc
cgccgtcgccgccgtcgcaagtccggtggcgaggggtcgggagacgccacgtccgaggac
gatccgccgaacaccgtcgtgcatgagcgtgagcctcgcaacaagagccgctcgaaggac
gaggtccagggcatcaccggttcgacacggctcgaggcgaagcgtcagcgccgccgcgac
ggccgcgatgccggccgccgcaggcctccgatcctcacggaatcggagttcctggcgcgc
cgcgaggccgtcgaccgcgtcatggtcgtgcgcgaccgcgtcgtctccgggcagccgcat
gcgacgacgcaggtcgccgtgctcgaggacggtgtcctcgtcgaacacttcgtgaccacg
tcggcgtcggcctcgatggtcggcaacgtgtacctcggacgcgtccagaacgtgctgccc
agcatggaagcggcgttcatcgacatcggccgcggccggaacggcgtgctgtacgccggc
gaggtcaattgggaggccgccgggctcggtggcaactcccgcaagatcgagcaggcgctc
aagcccggcgaccaggtgctggtccaggtcagcaaggacccggtcgggcacaagggtgcg
cggctgaccacgcagatcagcctcgcaggccgcttcctcgtctacgtgccgggcggcacg
tccaccggaatcagccgcaagctgcccgacacggaacgcaaacgcctcaaggacatcctg
cgcgacatcgtgccctcggacgccggagtcatcatccggaccgcgtcggagggtgtgagc
gaagaggaactcgcccgcgacgtgacgcgcctgcaggagcagtgggccgggatcgaggcg
caggccgcgaaggcggagtccggtaagtccggcaacccgcaggccctctacgaggagccc
gacctcctcgtgaaggtcatccgcgatctgttcaacgaggacttctccaagctcgtgatc
gagggcgagaaggcctggtcgacggtcgagtcgtacatccagtccgtcgctcccgatctc
atgccgaggttgaagcagcacacgtcggacaacggtgtcgacgtcttcgaagcgcaccgc
atcgacgagcagctggcgaaggcgctcgatcgtaaggtctggctgccgtccggcggcacg
ctcgtgatcgaccgcaccgaggccatgaccgtggtcgatgtcaacaccggcaagttcacc
ggtgccggcggaaacctcgaggagaccgtgacccggaacaacctcgaagccgccgaggag
atcgtccggcagatgcgcctgcgggacatcggcggcatgatcgtcgtcgacttcatcgac
atggtgctcgagtcgaaccgcgacctggtgctgcgacgtctgacggaggcgctgggccgg
gaccgcacgcgtcaccaggtgtccgaggtgacgtcgctcgggctcgtgcagatgacccgg
aagaagctgggcaccggcctggtcgaggcgttctcgaccacgtgcgagcactgccacggc
cgcggcatcatcgtccacgccgaaccgatcgaggtgaagacgtccgaggacgccggtgca
cgcgggtcgtcccgcggcggcgactccggaggctcccgcaagaagcgaggacgcgacaag
tcgtcgggtggggacacctcgcagggttccgcgcacgaggagaccccggcggtggacgcc
accgtgaagcgggctcacccggtcgctctcgcgatggcacaccaccatcacgaggaggag
actcgcgccgccgagactccggccgcgggcaaggacctgcccgggatcgaggaggccgtg
gccgaggcgcccgcagcggtggctgcggaagccgtcgtggcacccgaggccgaggtagct
gtcgtcgaagaggctgtcgtcgaggtagccgtcgaagccgtggccgaggcgcccgtcgtc
gaggcggcaccggccgaagaggctccggtcgaggcggcttcggtcgccgagaccccggaa
cccgtcgtggagcgcgcaccagagcccgcaccggaacccgaacccgctccggagccggtg
gccccgacgcggcgcaggagccggcgggtgtcgagggcggcggcagcgccggtgtccgaa
accccgagcgccgggaccgtgttcgtgattccgacgccggagcccggcgcggagcacgcg
ccggaaccggagccggccatgtcggcttcgaccgcgcacggaccggcggcgtcctcgccg
gacggcgcagatccgcaggcagcgccgcgcaagccgcggcgtcgacgggccgcggcccgt
cccgcaggcccgccggtcgacgccgaccactga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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