KEGG   RPAIR: RP13483Help
Entry
RP13483                     RPair                                  

Name
C00039_C02128
Compound
C00039  
DNA
C02128  
5'-Phospho-DNA
Type
main
RDM
1
1     O2b-O1c:C1y-*:P1b-P1b
RClass
Related pair
Reaction
Enzyme
6.5.1.1      6.5.1.2
KCF data Show

ALIGN       13
            1     6:O2b  25:O1c #R1
            2     9:P1b  21:P1b #M1
            3    12:O2b  16:O2b
            4    13:O1c  24:O1c
            5    14:O1c  26:O1c
            6    18:C1b  11:C1b
            7    20:C1y   8:C1y
            8    23:O2x  12:O2x
            9    24:C1y   6:C1y
            10   28:C1y  13:C1y
            11   29:C1x   9:C1x
            12   30:O1a   2:O2b
            13   33:R    17:R
            -     2:C1y     *   #D1
ENTRY1      
 COMPOUND  C00039
 ATOM      33
            1   C1y C    -0.0724    0.2690
            2   C1y C     0.1793   -0.5172
            3   O2x O     0.5897    0.7483
            4   C1b C    -0.8552    0.5276
            5   C1x C     1.0069   -0.5172
            6   O2b O    -0.3069   -1.1793
            7   C1y C     1.2621    0.2690
            8   O2b O    -2.1552    1.3379
            9   P1b P    -0.3103   -2.0069
            10  R   R     2.0448    0.5276
            11  P1b P    -2.1586    2.1621
            12  O2b O    -0.2483   -2.8793
            13  O1c O    -1.1345   -2.0035
            14  O1c O     0.5138   -2.0069
            15  O2b O    -2.1586    2.9862
            16  O1c O    -2.9828    2.1655
            17  O1c O    -1.3379    2.1621
            18  C1b C     1.3724   -3.5103
            19  C1y C    -1.6690    3.6517
            20  C1y C     2.1552   -3.7690
            21  C1y C    -1.9172    4.4345
            22  C1x C    -0.8414    3.6517
            23  O2x O     2.8138   -3.2862
            24  C1y C     2.4069   -4.5552
            25  O2x O    -1.2552    4.9103
            26  C1b C    -2.7000    4.6897
            27  C1y C    -0.5862    4.4345
            28  C1y C     3.4897   -3.7690
            29  C1x C     3.2345   -4.5552
            30  O1a O     1.9207   -5.2172
            31  O1a O    -3.3138    4.1448
            32  R   R     0.1966    4.6897
            33  R   R     4.2690   -3.5103
 BOND      35
            1     1   2 1
            2     1   3 1
            3     1   4 1 #Up
            4     2   5 1
            5     2   6 1 #Down
            6     3   7 1
            7     4   8 1
            8     6   9 1
            9     7  10 1 #Up
            10    8  11 1
            11    9  12 1
            12    9  13 1
            13    9  14 2
            14   11  15 1
            15   11  16 1
            16   11  17 2
            17   12  18 1
            18   19  15 1 #Down
            19   20  18 1 #Up
            20   19  21 1
            21   19  22 1
            22   20  23 1
            23   20  24 1
            24   21  25 1
            25   21  26 1 #Up
            26   22  27 1
            27   23  28 1
            28   24  29 1
            29   24  30 1 #Down
            30   26  31 1
            31   27  32 1 #Up
            32   28  33 1 #Up
            33    5   7 1
            34   25  27 1
            35   28  29 1
ENTRY2      
 COMPOUND  C02128
 ATOM      37
            1   P1b P    -1.4586    1.4345
            2   O2b O    -1.4517    2.2414
            3   O2b O    -0.6552    1.4379
            4   O1c O    -1.4621    0.6276
            5   O1c O    -2.2655    1.4379
            6   C1y C    -0.9793    2.8966
            7   C1b C    -0.4759    0.2690
            8   C1y C    -1.2310    3.6655
            9   C1x C    -0.1448    2.8966
            10  C1y C     0.3448    0.0034
            11  C1b C    -2.0000    3.9103
            12  O2x O    -0.5759    4.1414
            13  C1y C     0.0931    3.6552
            14  C1y C     0.6000   -0.7759
            15  O2x O     1.0000    0.4793
            16  O2b O    -2.6034    3.3655
            17  R   R     0.8828    3.8966
            18  O2b O     0.0966   -1.4759
            19  C1x C     1.4345   -0.7759
            20  C1y C     1.6690   -0.0103
            21  P1b P    -3.4276    3.3690
            22  P1b P     0.0931   -2.3345
            23  R   R     2.4586    0.2414
            24  O1c O    -3.4310    2.5448
            25  O1c O    -3.4310    4.1966
            26  O1c O    -4.2517    3.3759
            27  O2b O     0.9552   -2.3345
            28  O1c O     0.0897   -3.1966
            29  O1c O    -0.7655   -2.3310
            30  C1b C     1.1276   -3.5034
            31  C1y C     1.9483   -3.7724
            32  C1y C     2.2000   -4.5517
            33  O2x O     2.6069   -3.2966
            34  C1x C     3.0379   -4.5517
            35  O1a O     1.6931   -5.2448
            36  C1y C     3.2724   -3.7828
            37  R   R     4.0931   -3.5103
 BOND      39
            1     1   2 1
            2     1   3 1
            3     1   4 1
            4     1   5 2
            5     6   2 1 #Down
            6     3   7 1
            7     6   8 1
            8     6   9 1
            9    10   7 1 #Up
            10    8  11 1 #Up
            11    8  12 1
            12    9  13 1
            13   10  14 1
            14   10  15 1
            15   11  16 1
            16   13  17 1 #Up
            17   14  18 1 #Down
            18   14  19 1
            19   15  20 1
            20   16  21 1
            21   18  22 1
            22   20  23 1 #Up
            23   21  24 1
            24   21  25 1
            25   21  26 2
            26   22  27 1
            27   22  28 1
            28   22  29 2
            29   27  30 1
            30   31  30 1 #Up
            31   31  32 1
            32   31  33 1
            33   32  34 1
            34   32  35 1 #Down
            35   33  36 1
            36   36  37 1 #Up
            37   12  13 1
            38   19  20 1
            39   34  36 1

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