KEGG T00153: RPA3650

Rhodopseudomonas palustris CGA009: RPA3650

Entry

RPA3650 CDS T00153

Gene name

ligD

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rpa Rhodopseudomonas palustris CGA009

Pathway

rpa03410	Base excision repair
rpa03420	Nucleotide excision repair
rpa03430	Mismatch repair
rpa03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rpa03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rpa03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rpa03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rpa03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

CyanoBase:

CYORF:

UniProt:

Position

complement(4122046..4124790)

AA seq 914 aa
MASNKLSIYRKKRDFEQTAEPRGDAKVAPSKQRRFVIQKHDATRLHYDLRLEYGGVFKSW
AVTKGPSLDPNDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWECDDPERGF
KTGDLKFTLHGEKLHGSWVLVRMRHDRSGGKRTNWLLIKHRDDDAREGDANTVLDEDRSV
ASGRAMDTIAEGKGKAPKPFMLRKAATRVTADAVWDSNTGLAADKRAETGAAKKVAKSKP
TTSAKAKAAKSAKPASRSKPAAQGKRAAMPDFVPPQLCTSVERPPGGEGWGHEIKFDGYR
MQLRVEHGEARLLTRKGLDWTAKFGAIADEAASLPDAIIDTEVVALDSHGQPDFASLQAA
LSDGHTENLICFAFDLLYVDGEDLRGLPLAERKARLAALLKAARGRRKEGLIRYVEHFDT
GGDAILQSACKLSLEGIVSKKLDAAYRSGRSDGWTKAKCRAGHEVVIGGWKTTNGKFRSL
LVGVHRGDDLAYVGIVGTGFGQDVVKRILPELKAHKADTSPFSGANAPKKTREVHWVTPD
LVAEIEFAGFTGAGMVRQASFKGLRADKPAEEVEAEEPQRVELAEPAPMRRIAKASKSGK
PAAKRAAPRRADAARSEVMGVAISKPDKELWPASEIGAAITKRDLADYFAEVGDWLIPHI
KGRPCSILRAPDGIDGEHFFQRHAMPGMSNLIGLAKVSGDRKPYVQIDRVEGLIAAAQIG
GVELHPWNCAPNRYDVPGRLVFDLDPAPEVGFDEVITAAKEMKQRLEALGLKTFCKTTGG
KGLHVVVPLKPDDGIDWKAAKTFAQTVCAQMAEDSPEQYLLNMSKRKRIGKIFLDYLRND
RMSTAVAVLSPRARTGATVSMPLTWSQVKAGLDPKRYTIESVPALIKRSKAWTDYDDAAT
PLKAAIRTLTSGKT

NT seq 2745 nt +upstreamnt +downstreamnt
gtggccagcaacaagctcagcatctaccgcaagaaacgcgatttcgagcagaccgcggag
ccgcgtggcgatgccaaggtggcgccgtcgaagcagcggcggttcgtgatccagaagcac
gacgccacccggctacactacgacctgcgcctggaatacggcggcgtcttcaagtcttgg
gcggtgaccaagggaccgtcgctcgatccgaacgacaagcgtctcgctgtcgaggtcgag
gatcatccgctcgactacggagacttcgaaggcacgattccaaagggtcagtatggcggc
ggcacggtgcagctctgggaccgcggctattgggagtgcgacgatcccgagcgcggcttc
aagaccggcgacctgaagttcaccctgcatggcgagaagctgcatggcagctgggtgctg
gtgcggatgcggcacgaccgcagcggcggcaagcgcaccaattggctgctgatcaagcac
cgcgacgacgacgcccgcgagggcgacgccaacactgtgctcgacgaagaccgctcggtt
gcctcaggccgcgccatggacaccatcgcggaaggcaagggcaaggcaccgaagccgttc
atgttgcgcaaggcggccacgagggtcacggcggacgcggtgtgggattccaacaccggg
cttgctgccgataagcgggcggaaactggcgctgcgaagaaagtcgccaagtccaagcca
acgacttccgcgaaagcgaaagctgccaagtccgcgaagccagcgtcgcgaagtaagccg
gccgcgcaaggcaagcgcgcagccatgccggacttcgtgccgccgcagctctgcacctcg
gtggagcggccgcccggcggcgagggctggggtcacgaaatcaagttcgatggctaccgg
atgcaactccgcgtcgagcatggcgaagccaggctgctgacacgcaagggcctcgactgg
actgcgaaattcggtgcgatcgcggacgaagcggcatcgctgccggacgcgatcatcgac
accgaggtggtggcgctggattcgcacgggcagccggattttgcgtcattgcaggcggcg
ctgtccgatggtcacaccgagaatctgatctgcttcgcgttcgatctgctctacgtcgat
ggtgaggatctgcgcggcctgccgttggcggagcgcaaggcgcggcttgcggccctgctg
aaagcagcgcgcggccggcgcaaagaggggctgatccgttacgtcgagcatttcgacacg
ggcggggacgcgatcctgcaatcggcctgcaagctgtcgctcgaggggatcgtatcgaaa
aagctcgacgccgcgtatcgctccggtcgcagcgatggctggaccaaggcgaagtgccgc
gccggccatgaggtggtgatcggcggctggaagaccactaacggcaaattccgctcattg
cttgtcggcgtccatcgcggcgatgaccttgcctatgtgggtatcgtcggcaccggcttt
ggccaggacgtcgtcaaacgcatcctgcccgagctgaaagcgcacaaagcggataccagt
ccgttcagcggcgccaatgcgccgaagaagacccgtgaggtgcattgggttacgcccgat
ctcgtcgcagagatcgaatttgccggcttcaccggcgccggcatggtgcggcaggcgtcg
ttcaagggcctgcgtgccgacaagccggcggaggaggtggaggccgaggagccgcagcgg
gtcgagcttgccgagccggcaccgatgcgtcgcatcgccaaggcttcgaagtcgggcaag
ccggccgcaaagcgcgcggcgccgcgccgggccgatgccgcccgctccgaggtgatgggc
gtggcgatctccaaacccgacaaggagctgtggccggcgagcgagatcggcgccgcgatc
accaagcgcgatcttgccgattacttcgccgaggtcggcgactggctgatcccgcacatc
aaggggcggccgtgttcgatcctgcgcgcaccggacggaatcgacggcgagcacttcttc
cagcggcacgcgatgccgggaatgtcgaacctgatcgggctggcaaaggtctcaggcgac
cgtaagccgtatgtgcagatcgatcgtgtggaagggttgatcgcggcggcgcagatcggc
ggggtcgagctgcatccgtggaactgtgcgccgaaccgctacgacgtgccgggacgtctg
gtgttcgatctcgatccggcgcctgaggtcgggttcgacgaggtgatcacggccgcgaag
gaaatgaagcagcgcctcgaagcactggggctcaagactttctgcaagaccaccggcggc
aaggggctgcacgtcgtggtgccgctcaaacccgacgacggcatcgactggaaggcggcg
aagaccttcgcccagacggtgtgtgcgcagatggccgaggacagccccgagcaatatctg
ctcaacatgtcgaagcggaagaggatcggaaagatcttcctggattacttgcgcaacgac
cggatgtcgaccgcggtcgctgtgctgtcgccacgggcacgcaccggtgccacggtgtcg
atgccgctgacgtggtcgcaggtgaaggccgggctcgatcccaagcgctacacgatcgag
tcggtgcccgcgctgatcaagcgctcaaaggcgtggacggattacgacgacgccgcaact
ccgttgaaggccgcgatcaggacgctgacctcaggcaagacatag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   CYANOBASE-RPA (1)   
   CYORF-RPA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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