KEGG   Rhodopseudomonas palustris CGA009: RPA3650Help
Entry
RPA3650           CDS       T00153                                 

Gene name
ligD
Definition
ATP-dependent DNA ligase
Orthology
K01971  
DNA ligase (ATP) [EC:6.5.1.1]
Organism
rpa  Rhodopseudomonas palustris CGA009
Pathway
Base excision repair
Nucleotide excision repair
Mismatch repair
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpa00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    RPA3650 (ligD)
   03420 Nucleotide excision repair
    RPA3650 (ligD)
   03430 Mismatch repair
    RPA3650 (ligD)
   03450 Non-homologous end-joining
    RPA3650 (ligD)
Enzymes [BR:rpa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RPA3650 (ligD)
DNA repair and recombination proteins [BR:rpa03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RPA3650 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
CyanoBase: 
CYORF: 
UniProt: 
Position
complement(4122046..4124790)
Genome map
AA seq 914 aa AA seqDB search
MASNKLSIYRKKRDFEQTAEPRGDAKVAPSKQRRFVIQKHDATRLHYDLRLEYGGVFKSW
AVTKGPSLDPNDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWECDDPERGF
KTGDLKFTLHGEKLHGSWVLVRMRHDRSGGKRTNWLLIKHRDDDAREGDANTVLDEDRSV
ASGRAMDTIAEGKGKAPKPFMLRKAATRVTADAVWDSNTGLAADKRAETGAAKKVAKSKP
TTSAKAKAAKSAKPASRSKPAAQGKRAAMPDFVPPQLCTSVERPPGGEGWGHEIKFDGYR
MQLRVEHGEARLLTRKGLDWTAKFGAIADEAASLPDAIIDTEVVALDSHGQPDFASLQAA
LSDGHTENLICFAFDLLYVDGEDLRGLPLAERKARLAALLKAARGRRKEGLIRYVEHFDT
GGDAILQSACKLSLEGIVSKKLDAAYRSGRSDGWTKAKCRAGHEVVIGGWKTTNGKFRSL
LVGVHRGDDLAYVGIVGTGFGQDVVKRILPELKAHKADTSPFSGANAPKKTREVHWVTPD
LVAEIEFAGFTGAGMVRQASFKGLRADKPAEEVEAEEPQRVELAEPAPMRRIAKASKSGK
PAAKRAAPRRADAARSEVMGVAISKPDKELWPASEIGAAITKRDLADYFAEVGDWLIPHI
KGRPCSILRAPDGIDGEHFFQRHAMPGMSNLIGLAKVSGDRKPYVQIDRVEGLIAAAQIG
GVELHPWNCAPNRYDVPGRLVFDLDPAPEVGFDEVITAAKEMKQRLEALGLKTFCKTTGG
KGLHVVVPLKPDDGIDWKAAKTFAQTVCAQMAEDSPEQYLLNMSKRKRIGKIFLDYLRND
RMSTAVAVLSPRARTGATVSMPLTWSQVKAGLDPKRYTIESVPALIKRSKAWTDYDDAAT
PLKAAIRTLTSGKT
NT seq 2745 nt NT seq  +upstreamnt  +downstreamnt
gtggccagcaacaagctcagcatctaccgcaagaaacgcgatttcgagcagaccgcggag
ccgcgtggcgatgccaaggtggcgccgtcgaagcagcggcggttcgtgatccagaagcac
gacgccacccggctacactacgacctgcgcctggaatacggcggcgtcttcaagtcttgg
gcggtgaccaagggaccgtcgctcgatccgaacgacaagcgtctcgctgtcgaggtcgag
gatcatccgctcgactacggagacttcgaaggcacgattccaaagggtcagtatggcggc
ggcacggtgcagctctgggaccgcggctattgggagtgcgacgatcccgagcgcggcttc
aagaccggcgacctgaagttcaccctgcatggcgagaagctgcatggcagctgggtgctg
gtgcggatgcggcacgaccgcagcggcggcaagcgcaccaattggctgctgatcaagcac
cgcgacgacgacgcccgcgagggcgacgccaacactgtgctcgacgaagaccgctcggtt
gcctcaggccgcgccatggacaccatcgcggaaggcaagggcaaggcaccgaagccgttc
atgttgcgcaaggcggccacgagggtcacggcggacgcggtgtgggattccaacaccggg
cttgctgccgataagcgggcggaaactggcgctgcgaagaaagtcgccaagtccaagcca
acgacttccgcgaaagcgaaagctgccaagtccgcgaagccagcgtcgcgaagtaagccg
gccgcgcaaggcaagcgcgcagccatgccggacttcgtgccgccgcagctctgcacctcg
gtggagcggccgcccggcggcgagggctggggtcacgaaatcaagttcgatggctaccgg
atgcaactccgcgtcgagcatggcgaagccaggctgctgacacgcaagggcctcgactgg
actgcgaaattcggtgcgatcgcggacgaagcggcatcgctgccggacgcgatcatcgac
accgaggtggtggcgctggattcgcacgggcagccggattttgcgtcattgcaggcggcg
ctgtccgatggtcacaccgagaatctgatctgcttcgcgttcgatctgctctacgtcgat
ggtgaggatctgcgcggcctgccgttggcggagcgcaaggcgcggcttgcggccctgctg
aaagcagcgcgcggccggcgcaaagaggggctgatccgttacgtcgagcatttcgacacg
ggcggggacgcgatcctgcaatcggcctgcaagctgtcgctcgaggggatcgtatcgaaa
aagctcgacgccgcgtatcgctccggtcgcagcgatggctggaccaaggcgaagtgccgc
gccggccatgaggtggtgatcggcggctggaagaccactaacggcaaattccgctcattg
cttgtcggcgtccatcgcggcgatgaccttgcctatgtgggtatcgtcggcaccggcttt
ggccaggacgtcgtcaaacgcatcctgcccgagctgaaagcgcacaaagcggataccagt
ccgttcagcggcgccaatgcgccgaagaagacccgtgaggtgcattgggttacgcccgat
ctcgtcgcagagatcgaatttgccggcttcaccggcgccggcatggtgcggcaggcgtcg
ttcaagggcctgcgtgccgacaagccggcggaggaggtggaggccgaggagccgcagcgg
gtcgagcttgccgagccggcaccgatgcgtcgcatcgccaaggcttcgaagtcgggcaag
ccggccgcaaagcgcgcggcgccgcgccgggccgatgccgcccgctccgaggtgatgggc
gtggcgatctccaaacccgacaaggagctgtggccggcgagcgagatcggcgccgcgatc
accaagcgcgatcttgccgattacttcgccgaggtcggcgactggctgatcccgcacatc
aaggggcggccgtgttcgatcctgcgcgcaccggacggaatcgacggcgagcacttcttc
cagcggcacgcgatgccgggaatgtcgaacctgatcgggctggcaaaggtctcaggcgac
cgtaagccgtatgtgcagatcgatcgtgtggaagggttgatcgcggcggcgcagatcggc
ggggtcgagctgcatccgtggaactgtgcgccgaaccgctacgacgtgccgggacgtctg
gtgttcgatctcgatccggcgcctgaggtcgggttcgacgaggtgatcacggccgcgaag
gaaatgaagcagcgcctcgaagcactggggctcaagactttctgcaagaccaccggcggc
aaggggctgcacgtcgtggtgccgctcaaacccgacgacggcatcgactggaaggcggcg
aagaccttcgcccagacggtgtgtgcgcagatggccgaggacagccccgagcaatatctg
ctcaacatgtcgaagcggaagaggatcggaaagatcttcctggattacttgcgcaacgac
cggatgtcgaccgcggtcgctgtgctgtcgccacgggcacgcaccggtgccacggtgtcg
atgccgctgacgtggtcgcaggtgaaggccgggctcgatcccaagcgctacacgatcgag
tcggtgcccgcgctgatcaagcgctcaaaggcgtggacggattacgacgacgccgcaact
ccgttgaaggccgcgatcaggacgctgacctcaggcaagacatag

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