KEGG   Rhodopseudomonas palustris HaA2: RPB_2023
Entry
RPB_2023          CDS       T00321                                 
Name
(GenBank) ATP-dependent DNA helicase, Rep family
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
rpb  Rhodopseudomonas palustris HaA2
Pathway
rpb03420  Nucleotide excision repair
rpb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rpb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RPB_2023
   03430 Mismatch repair
    RPB_2023
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpb03400]
    RPB_2023
Enzymes [BR:rpb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RPB_2023
DNA repair and recombination proteins [BR:rpb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RPB_2023
   MMR (mismatch excision repair)
    Other MMR factors
     RPB_2023
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 AAA_30 UvrD_C_2 PcrA_UvrD_tudor DUF3482 DUF3553 AAA_11
Other DBs
NCBI-ProteinID: ABD06731
UniProt: Q2IYH9
Position
complement(2299877..2302414)
AA seq 845 aa
MTEPNKRANPDLSGYQPAAGGIAARARASAAPAYLSGLNPEQREAVETLDGPVLVLAGAG
TGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQMLGQAVEGMPWLGTFH
SIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQLLAADNIDDKRWPARMLAGLIDGWKN
RGLTPSQVPAGEAASFGNGRGGKLYAAYQERLKVLNAADFGDLLLENIRLFREHPDVLRQ
YQSRFKFILVDEYQDTNVAQYLWLRLLSQAPSSSSSSLPGLTRQSIISQEDGSPGRDASR
RPGDDDRTSGDVAAPSSPPKNICCVGDDDQSIYGWRGAEVDNILRFDHDFPGAKVIRLER
NYRSTGHILAAASHLIAHNEGRLGKTLRTEDVDGEMVTVTGAWDSEEEARGIGEEIEQLQ
RQGHKLNEIAILVRASFQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRVINSP
ADDLAFERIVNVPKRGLGDATVQLLHDHARKRRIPLFEASRLVVETDELKPKARSSLRGL
IENFERWQVQRNALSHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFEN
LQGFLEHISLVMDRDGAADEDAVSVMTLHSAKGLEFETVFLPGWEEGLFPHQRALDDQGR
AGLEEERRLAHVGITRARRRAKLYFATNRRIHGTWNTTIPSRFLDELPQANVEITESKGG
SGWGGMSGYGPSRFDNVESFGSSYSTPGWQRAQAQRKNGGGRSGGGGFSESGASYSSSPR
RAPFTIEGELVAKSTGTDSDFTVSDRVFHQKFGYGQVTKIDGNKLTIAFDKAGEKKVVDS
FVQRV
NT seq 2538 nt   +upstreamnt  +downstreamnt
atgactgaaccgaacaagcgcgccaatcccgacctctccggctatcagcccgccgccggc
ggcatcgccgcgcgggcgcgcgcctccgcggcgccggcctatctgtcggggctcaatccg
gagcagcgcgaggcggtcgagacgctggacggcccggtgctggtgctggccggcgcgggc
accggcaagacccgggtgctgacgacgcggatcgcccacatcctctccaccggccgcgcc
cgccccgccgagatcctgtcggtgaccttcaccaacaaggccgcgcgcgagatgaagctg
cggctggggcagatgctcggccaggcggtcgagggcatgccgtggctcggcaccttccat
tccatcggcggccgcatcctgcgctatcacgccgaactggtgcagctcacctcgaacttc
accgtgctcgacaccgacgaccagataaggctgctgaagcagctcctcgccgccgacaat
atcgacgacaagcgctggccggcgcggatgctggccgggctgatcgacggctggaagaac
cgcggcctgacgccgtcgcaggtgcccgccggcgaagccgcgagcttcggcaacggccgc
ggcggcaagctctacgccgcctatcaggagcggctgaaagtgctgaacgccgccgatttc
ggcgatctgctgctggagaacataaggctgttccgcgagcaccccgacgtgctgcggcaa
tatcaaagccgcttcaagttcatcctggtcgacgagtatcaggacacgaacgtcgcgcag
tatctctggctgcggctgctgtcgcaggcgccgtcgtcctcctcgtcgtcattgccgggc
ttgacccggcaatccatcatttctcaagaagatggatcaccgggtcgcgacgcttcgcgt
cggcccggtgatgacgacagaacaagcggcgatgtcgctgcgccttcctcgccccccaaa
aacatctgctgcgtcggcgacgacgatcagtcgatctatggctggcgcggtgccgaggtc
gacaacatcctgcgcttcgaccacgatttccccggcgccaaggtcattcgcctcgaacgc
aattatcgctcgaccggccacatcctcgccgccgcctcgcatctgatcgcccataacgaa
ggccggctcggcaagacgctgcgcaccgaggacgtcgacggcgagatggtcaccgtcacc
ggcgcgtgggactccgaggaagaagcccgaggcatcggcgaggagatcgagcagctgcag
cgccagggccacaagctcaacgagatcgccatcctggtgcgcgcctcgttccagatgcgc
gaattcgaagaccgcttcgtcaccctcggcctgccctatcgcgtcatcggcggtccgcgg
ttctacgagcgcgccgaaatccgcgacgcgctggcgtatctgcgcgtgatcaattcgccg
gccgacgatctcgccttcgagcgcatcgtcaacgtgccgaagcgcggcctcggcgacgcc
accgtgcagctcttgcacgaccacgcccgcaagcgccgcattccgctgttcgaagcgtcg
cggctggtggtcgagaccgacgagctgaagccgaaggcgcgcagttcgctgcgcgggctg
atcgagaatttcgagcgctggcaggtgcagcgcaacgcgctgtcgcataccgaactcgcc
gagatcgtgctcgacgagagcggctacaccgagatgtggcagaaggaccgctccgccgac
gccgccggccggctggagaacctgaaggaactcgtccgctcgatggaggagttcgagaac
ctgcaaggatttctcgaacacatctcgctggtgatggaccgcgacggcgccgccgacgag
gacgccgtcagcgtgatgacgctgcattccgccaagggcctggaattcgagacggtgttc
ctgcccggctgggaggaaggcctgtttccacatcagcgcgcgctcgacgatcagggccgc
gccgggctggaagaagaacgccgcctcgcccatgtcggcattacgcgggcgaggcgccgg
gcgaagttgtacttcgccaccaaccgccgcatccacggcacctggaacaccacgatcccg
tcgcgctttctcgacgaactgccgcaggccaatgtcgagatcaccgagtcgaaaggcggc
tccggctggggcggcatgagcggctacggcccgtcgcgcttcgacaatgtcgaatcgttc
ggctccagctactcgacgccgggctggcagcgcgcccaggcgcaacgtaaaaacggcggc
ggccgcagcggcggcggcggtttcagcgaaagcggcgcgtcctactcatccagcccccgc
cgcgccccgttcaccatcgaaggcgaactggtcgccaaatccaccggcaccgactccgac
ttcaccgtcagcgaccgggtgtttcatcaaaagttcggctacggccaagtgacgaaaatc
gacggcaacaagctcaccatcgccttcgacaaggccggcgaaaagaaggtggtcgatagt
ttcgtgcagcgggtgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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