KEGG R.palustris_HaA2: RPB

Rhodopseudomonas palustris HaA2: RPB_3563

Entry

RPB_3563 CDS R.palustris_HaA2

Gene name dnaE2

Definition error-prone DNA polymerase (EC:2.7.7.7)

Orthology K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]

Pathway rpb00230 Purine metabolism
rpb00240 Pyrimidine metabolism
rpb01100 Metabolic pathways
rpb03030 DNA replication
rpb03430 Mismatch repair
rpb03440 Homologous recombination

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:rpb00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:rpb00240]
Genetic Information Processing; Replication and Repair; DNA
replication [PATH:rpb03030]
Genetic Information Processing; Replication and Repair; Mismatch
repair [PATH:rpb03430]
Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:rpb03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: DNA_pol3_alpha tRNA_anti PHP

Other DBs NCBI-GI: 86750673
NCBI-GeneID: 3911365
JGI: RPB3563
UniProt: Q2IU52

Position complement(4080171..4083668)

AA seq 1165 aa
MNAPRYAEIGVTTNFSFLEGGSHPQDYVHQASRLGLDAIGIADRNTLAGVVRAYSELDNE
ELAYKPKLLIGARLCFVDGTPDVLAYPTDRAAYGRLCRLLSAGKLRAGKGECHLTFADLE
AFVSSNAARPFPSSWPGLTRPSTSLQPRVLQDVDARDKPGHDGGKREIGRSQILFVLMPP
YRFQAKAITAALERLTALNSGNVWLALAPYYRGDDKRRLARLRRIAAAADVPGIATNDVL
YHHPSRRALQDVLTCVRDKTTIDKAGRRLEGNAERHLKPAAEMARLFRADLDAVAETLRF
ADRISFTLDELKYHYPDEPVPPGKTAQQHLEDLTREGIATYFPNGISDRLRATIAKELTL
IAKRDYAHYFLTVHDIVRYARSQNILCQGRGSAANSAVCYVLGITCVDPTEIDLLFERFV
SEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAAIVSTVIHYRPRSAIRDVGKALGLS
EDVTAALADTVWGSWGKGLSEMQVRQAGLDPTNPMIGRAVELATELIGFPRHLSQHVGGY
VLTQDRLDSYVPIGNAAMADRTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKGFDLIAQH
KGVRFQLSDIKSEDDNNVYQMLQRGESIGVFQVESRAQMNMLPRLKPRCFYDLVIEVAIV
RPGPIQGDMVHPYLRRRNGQEPVVYPSPSGEAGDKNELQQILGKTLGVPLFQEQAMRIAI
EAAHFTPDEANQLRRAMATFRNVGTIGKFESKMIGNLMARGYDATFAKNCFEQIKGFGSY
GFPESHAASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARANKVEVRPV
DVSFSDGQCTLEERCGAYHAVRLGFRQIDGFRWADPDEERVRLEAGLPPSDDWAARIVAA
RARGPFGSLEQFARITALPKRALILLADADAFRSLGLDRRAALWAVRRLPDDVPLPLFEA
ASAREQQDEQAAPLPQMPMAEHVVADYQTVRLSLKGHPLEFLRAVFATERVVTCREVSET
RRNGRRVRCAGVVLVRQRPGSASGVIFMTIEDETGIANIVVWPSVMEKFRKEVMGARLIL
VEGKIQASPEGVVHLVAERLVDRSSEMGRLSEGLARPPLPTGADLYEPLTYEPLNGDRRD
NPDAPAQRLRHPRDVRILPPSRDFH

NT seq 3498 nt +upstreamnt +downstreamnt
atgaacgccccgcgctacgccgagatcggcgtcaccaccaatttctcgttcctcgaaggc
ggctcgcacccgcaggactacgtgcatcaggcgagtcgtctcggcctcgatgcgatcggc
atcgccgaccgcaacacgctggccggcgtggttcgcgcctacagcgagctcgacaacgag
gagctcgcttacaaaccaaagctgctgatcggtgcaaggctgtgttttgtcgacggcacg
cccgacgtgctggcctatccgaccgaccgcgccgcctacggccggctgtgccggctgctc
agcgccggcaagctgcgcgccgggaagggcgagtgccatctgacgtttgcggatctggag
gcatttgtgtcgagcaatgctgctcgaccctttccttcgtcatggccgggcttgacccgg
ccatccacgtctttgcagccgcgcgtcttgcaagacgtggatgcgcgggacaagcccggg
catgacgggggaaaacgcgaaatcggccgctcgcagatcctgttcgtcctgatgccgccc
tatcgctttcaggcgaaggcgattacagccgcgttggagcggctgacggcgctgaacagc
ggcaatgtctggctcgccctggcgccgtattatcgcggcgacgacaagcgccggctggcg
cggttgcggcggatcgcggcggcggcggacgtgcccggcatcgccaccaacgacgtgctg
tatcaccacccgtcgcggcgcgcgctgcaggacgtgctgacctgcgtgcgcgacaagacc
accatcgacaaggcggggcgacgcctggaaggcaacgccgagcggcatctcaagcccgcc
gccgagatggcgcggctgttccgcgccgacctcgacgcggtcgccgagacgctgcgcttt
gcggatcgcatctcgttcacgctggacgaattgaaatatcactaccccgacgagccggtg
ccgcccggcaagaccgcgcagcagcatctcgaagatctcacccgagagggcatcgcaacc
tatttcccgaacggcatcagcgacagattgcgcgccaccatcgccaaggaattgaccctc
atcgccaagcgcgactacgcgcattacttcctcaccgtgcacgacatcgtccgctatgcg
cggtcgcagaacatcctgtgccaggggcgcggctcggcggcgaattcggccgtctgctac
gtgctcggcatcacctgcgtcgatccgaccgagatcgacctgttgttcgagcgcttcgtc
tcggaggaacgcgacgagccgccggacatcgacgtcgatttcgaacattcgcgccgcgaa
gaggtgatgcagtacatctatcgccgctacggccggcatcgcgccgcgatcgtctccacc
gtgattcactatcggccgcgctcggcgatccgcgacgtcggcaaggcgctggggctctcc
gaagacgtcaccgcggcgctcgccgacacggtgtggggaagctggggcaagggcctgagc
gagatgcaggtgcggcaggccgggctcgatccgaccaatccgatgatcgggcgcgcggtc
gagctcgccaccgagctgatcggctttccgcggcatctgtcgcagcatgtcggcggctac
gtgctgacgcaggaccggctcgacagctacgtgccgatcggcaacgccgcgatggcggac
cgcaccttcatcgaatgggacaaggacgacatcgacgcggtgaagatgatgaaggtcgac
gtgctggcgctcgggatgctgacctgcatccgcaagggtttcgacctgatcgcgcagcac
aagggcgtgcgcttccagctctccgacatcaagtcggaggacgacaacaacgtctaccag
atgctccagcgcggcgagtcgatcggggtgttccaggtcgagagccgggcgcagatgaac
atgctgccgcggctgaagccgcgctgcttctacgatctcgtcatcgaggtcgcgatcgtg
cggccggggccgatccagggcgacatggtgcatccttatttgagacggcggaacggccag
gagccggtggtgtatccgtcgccgtccggcgaggccggcgacaagaacgaactgcagcag
atcctcggcaagacgctcggcgtgccgctgttccaggagcaggcgatgcgcatcgccatc
gaggcggcgcatttcacgccggacgaggccaatcagctccgccgcgcgatggcgacgttc
cgcaatgtcggcaccatcggcaagttcgagagcaagatgatcggcaatctgatggcgcgc
ggctacgacgccaccttcgccaagaactgcttcgaacagatcaagggcttcggctcctac
ggctttcccgaaagccatgccgccagcttcgccaagctggtctatgtctcggcgtggatg
aaatgcgagcaccccgacgcgttctgctgcgcgctgctcaactcacagccgatgggtttc
tacgcgccggcgcagatcgtcggcgatgcacgggccaacaaggtcgaggtgcggccggtc
gacgtgtcgttcagcgacgggcaatgcacgctggaggagcgctgcggcgcgtatcacgcg
gtgcggctcggcttccgccagatcgacggcttccgctgggccgatccggacgaagagcgc
gtgcggctggaagccggcctgccgccgagcgacgactgggcggcccgcatcgtcgcggcg
cgggcgagggggccgttcggctcgctcgaacagttcgcgcggatcacggcgctgccgaag
cgcgcgctgatcctgctggcggacgccgatgccttccgctcgctcgggctcgatcgccgc
gccgcgctgtgggcggtgcggcggctgcccgacgacgtgccgctgccgttgttcgaagcc
gcgagcgcgcgcgaacagcaggacgaacaggccgcgccgctgccgcagatgccgatggcc
gagcatgtcgtcgcggattatcagacggtgcggctgtcgctgaagggccatccgttggaa
ttcctgcgggcggtgttcgcgacggagcgggtggtgacgtgtcgcgaggtctcggagacg
cggcgcaatggccggcgcgtgcgctgcgccggcgtggtgctggtgcggcagcggccgggt
tcggccagcggcgtgatcttcatgaccatcgaggacgagaccggcatcgccaacatcgtg
gtgtggccatcggtgatggagaaatttcgcaaggaagtgatgggcgcccggctgatcctg
gtcgaaggcaagatccaggcgagcccggaaggtgtagtgcatctggtggcggagcggttg
gtcgatcgctcgtccgagatgggccgcctgtccgagggcctcgctcgtccgccgctgccg
accggggccgacctgtatgaaccgctgacgtatgaaccgctcaacggcgaccgccgcgac
aatcccgacgcgcccgcccagcgcctgcgccacccccgcgacgtccgcatcctgccgccg
tcgcgggattttcattga

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JGI-RPB (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)

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