KEGG   Rhodopseudomonas palustris BisB5: RPD_0212Help
Entry
RPD_0212          CDS       T00345                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
rpd  Rhodopseudomonas palustris BisB5
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:rpd00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    RPD_0212
Enzymes [BR:rpd01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     RPD_0212
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     RPD_0212
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
242693..243574
Genome map
AA seq 293 aa AA seqDB search
MPELPEVETVRLGLTPAMEGFRIARAVTNRDDLRFPLQKDFVARLTGQIVTGLGRRAKYL
LADLASGDVLLMHLGMSGSFRVVAADGAHTPGEFHHPRSEDRTHDHVVFDMSSGARVIFN
DPRRFGFMKIFPRAAIDDEPHLKGLGPEPLGNAFDAVMLARACAGKQTSLKAALLDQRVV
AGLGNIYVCEALWRAHLSPKRKAATLANRKNEPTDHALRLTDAIRAVLGDAIKAGGSSLR
DHRQTSGELGYFQHSFAAYDREGERCRTDGCGGAVKRFVQNGRSTFWCSGCQK
NT seq 882 nt NT seq  +upstreamnt  +downstreamnt
atgcctgaactgcccgaagtcgaaaccgtccgcctcggcctgacgcccgcgatggaaggg
ttccggatcgcgcgggcggtgacgaatcgggacgatctgcggtttccgctgcagaaggat
tttgtcgcgcggctgaccggacagatcgtcacggggctggggcggcgcgccaaatatctg
ctggccgacctcgcttccggcgacgtgctgctgatgcatctcgggatgtccggctcgttc
cgggtggtcgccgccgacggcgcgcacacgccgggcgaatttcaccatccgcgcagcgag
gaccgcacccatgatcatgtggtgttcgacatgtcgtccggcgcgcgggtgatcttcaac
gacccgcggcggttcggcttcatgaagatctttccgcgcgccgccatcgacgacgagccg
catctcaagggactcggccccgagccgctcggcaacgccttcgacgccgtgatgctggcg
cgcgcctgcgccggcaagcagaccagcctgaaggcggcgctgctggaccagcgcgtcgtc
gccgggctcggcaacatctatgtctgcgaggcgctgtggcgcgcgcatctgtcccccaag
cgcaaggcggcgacgctcgccaaccgcaagaacgagccgaccgatcacgcgctgcggctg
accgacgcgatccgcgccgtgctcggcgacgccatcaaggccggcggctcgtcgctgcgc
gaccaccgccagacctccggcgaactcggttacttccagcattccttcgccgcctacgac
cgcgaaggcgaacgctgccgcaccgacggctgcggcggcgccgtgaagcgcttcgtgcag
aacggccgctcgacgttctggtgttcggggtgtcagaagtag

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