KEGG T00345: RPD

Rhodopseudomonas palustris BisB5: RPD_0793

Entry

RPD_0793 CDS T00345

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rpd Rhodopseudomonas palustris BisB5

Pathway

rpd03410	Base excision repair
rpd03420	Nucleotide excision repair
rpd03430	Mismatch repair
rpd03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rpd03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rpd03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rpd03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rpd03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(889466..891358)

AA seq 630 aa
MNRFAELLDRLAYEPGRNNKLRLITNYFRATEDPDRGYALAALTGALSFRHAKPGLIREL
IAARTDPVLFGLSYDYVGDLSETVALMWPTPRNTAVSTPAGGASSPPPGSASSPPPCGEG
SGVGGHSGTPSSWHPHPNPLPQAGEGARSAWGEDRDSELSAATSPGHNNPPPPSLTEIVT
TLHSLGKAELPAQLTRWLDELDETGRWALLKLVTGGLRIGVSARLAKTAAAALGDKDPHD
VELMWPGLDAPYLDLFAWLEGRGPQPVNRDPAPFRPVMLAHALEDTDFAAMNAADYIAEW
KWDGIRVQAVSGVGDDGDTIVRLYSRSGEDITRSFPDLLPSLRLPGAIDGELLVLRESRV
QSFNVLQQRLNRKSVTPKLIKEYPIHLRAYDLLGEGDDDLRTLTFAERRARLEAFVARLD
EPKIDLSPMVTFADWDDLHAARRDPASAGAGLDADAVEGVMLKRRDAPYLPGRPKGQWWK
WKHDPHIIDAVLMYAQRGHGKRSSYYSDYTFGVWTAGDGGDQLVPVGKAYFGFTDEELLQ
IDRFVRRNTTEKFGPVRHVVHEPDQGLVLEVAFEGLQRSPRHKSGVAMRFPRISRLRWDK
PPRDADRLETLERMLKADGAIPSAAPARGH

NT seq 1893 nt +upstreamnt +downstreamnt
atgaaccgcttcgccgaactgctcgaccgtctggcctacgagcccggccgcaacaacaag
ctgcggctgatcaccaattacttccgcgccaccgaagaccccgatcgcggctatgcgctc
gcggcgctgaccggcgcgctgtcgttccgccacgccaagcccggcctgatccgcgaactg
atcgccgcccgtaccgatccggtgctgttcggcctttcatatgattacgtcggcgatctg
tcggagacggtggcgctgatgtggccgacgccgcgcaatacggccgtctccactcccgct
ggcggagcctcttcccctccccccggctcggcctcctcccctcccccttgcggggagggg
tcgggggtggggggccacagcgggacgccatcctcgtggcaccctcaccccaaccctctc
ccgcaagcgggagagggagcgcgcagtgcttggggcgaggaccgtgattcagaactaagc
gccgcaacgagccccggccacaacaatccaccgcccccgtcgctcaccgagatcgtcacc
acgctgcacagcctcggcaaggccgagctgccggcgcagctcacgcgctggctcgacgag
ctggatgaaaccggccgctgggcgctgctgaagctcgtcaccggcggcctgcggatcggc
gtctcggcgcggctggcgaagaccgcagcggccgcgctcggcgacaaggacccgcacgac
gtcgagctgatgtggcccggactcgatgcaccctatctcgatctgttcgcctggctggaa
ggccgcgggccccaaccggtcaatcgcgatccggcgccgtttcgcccggtgatgctggcg
catgcgctcgaggacaccgacttcgccgcgatgaatgccgccgactacatcgccgaatgg
aaatgggacggcatccgcgtgcaggcggtgagcggcgttggtgatgatggcgacaccatc
gtacggctgtattcgcgcagcggcgaggacatcacgaggagcttccccgacttgctgccg
tcgctgcgattaccgggcgcgatcgacggcgagttgctggtgttgcgcgagagccgggtg
cagtcgttcaacgtgctgcagcagcggctcaaccgcaaatcggtgacgccgaagctgatc
aaggagtatccgatccatctgcgcgcctacgacctgctcggcgagggcgacgacgatctg
cgtacgttgacgtttgccgaacgccgcgcacggctggaggcgttcgtcgcacggctcgac
gaacccaagatcgacctgtctccgatggtgacattcgccgactgggatgatttgcacgcg
gcgcggcgcgatcccgccagcgccggagccggcctcgatgccgacgcggtcgagggcgtg
atgctgaagcggcgcgatgcgccgtatctgcccggccgcccgaaaggccaatggtggaag
tggaaacacgatccccacatcatcgacgcggtgctgatgtatgcccagcgcggccatggc
aagcgctcgtcttattattcggactacaccttcggggtctggaccgcaggcgacggcggc
gatcagctcgtcccggtcggcaaggcgtatttcggctttaccgacgaggaattgctgcag
atcgaccgcttcgtccgccgcaacaccaccgaaaaattcggcccggtccgccatgtcgtg
cacgaacccgatcagggccttgtgctggaagtcgctttcgaggggctgcagcgctcgccg
cggcacaaatccggcgtggcgatgcgttttccgcggatcagccggctgcgctgggacaag
ccgccgcgcgacgccgaccggctggagacgctggagcggatgttgaaggccgacggcgcg
attccatccgcggcgcccgcccgcggccattga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RPD (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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