KEGG   Rhodopseudomonas palustris BisB5: RPD_1899
Entry
RPD_1899          CDS       T00345                                 
Name
(GenBank) phage SPO1 DNA polymerase-related protein
  KO
K21929  uracil-DNA glycosylase [EC:3.2.2.27]
Organism
rpd  Rhodopseudomonas palustris BisB5
Pathway
rpd03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rpd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    RPD_1899
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpd03400]
    RPD_1899
Enzymes [BR:rpd01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.27  uracil-DNA glycosylase
     RPD_1899
DNA repair and recombination proteins [BR:rpd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     RPD_1899
SSDB
Motif
Pfam: DUF4130 UDG SEF14_adhesin
Other DBs
NCBI-ProteinID: ABE39134
UniProt: Q139V5
Position
complement(2132717..2134159)
AA seq 480 aa
MHSIRLDSDTDFHGWRKAARELVLAEVAPADISWTVAGDEPELFDALAPPAPSPSAPSSG
TFNVPARFVELAATAILHRDPQRFAWLYQALWRLRANPELLQIATDPDVARLQAMVKAVR
RDEHKMHAFVRFREIGREPKSRYVAWFEPEHHIVEAAAPFFARRFADMAWSILTPDVCAH
WDGHAIAITPGVAKAMAPSEDRLEETWLTYYASIFNPARLKTKAMQAEMPKKYWRNLPEA
ALIKPLIEHAERAAHAMIAAEATAPKKPQRQEQPMSRAGHEGDRLETLREQARDCRACDL
WKDATQTVFGEGPPHASVMLVGEQPGDKEDLAGHPFVGPAGQMLDRALAEAGIDRAETYV
TNAVKHFKFVPRGKIRLHQKPAMPEIKACRPWYERELAAVRPQLVVAMGATAAQSVLGRI
TPINKNRGHLIDRDGGPQVLVTVHPSYLLRLPDDDAKAREYARFVDDLKIAAAHLKAGAA
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgcattccatccggctcgacagcgacaccgatttccatggctggcgcaaggcggcgcgg
gagcttgtgctggcggaggtcgcgccggctgatatcagttggacggtggcaggcgacgag
cccgaattgttcgatgcgctagcgccgcctgcgccctccccgagtgcgccgtcgtccggc
accttcaacgttcccgctcgcttcgtcgagcttgcggcgaccgcgatcctgcatcgcgat
ccgcagcgcttcgcctggctgtatcaagcgctgtggcggctgcgcgccaacccggagctg
ttgcagatcgcgaccgatccggacgttgcgcggctgcaggcgatggtgaaggcggtgcgc
cgcgatgagcacaaaatgcacgccttcgtccgctttcgcgagatcggccgcgagccaaag
tcgcgctacgtcgcctggttcgagcccgagcaccatatcgtcgaggctgcggcaccgttc
ttcgcccggcgcttcgccgacatggcgtggtcgatcctgacgccggacgtctgcgcgcat
tgggacggacacgccattgcgatcacgccgggcgtcgccaaggcgatggccccatccgag
gatcgattggaagaaacctggctgacctactacgccagcatcttcaatccagcgcggctg
aagaccaaggcgatgcaggcggaaatgccgaagaaatactggcgcaatctaccggaagca
gcattgatcaagccgctgatcgagcatgccgagcgcgccgcgcacgcaatgatcgccgcg
gaggcgaccgcgccgaagaaaccacaacggcaggaacagccgatgagccgagccggacac
gaaggcgataggctcgaaaccttgcgcgaacaggcgcgcgactgccgcgcctgcgatctg
tggaaggacgcgacgcagaccgtgttcggcgaaggtcccccgcatgcaagcgtgatgctg
gtcggcgagcagcccggcgacaaggaagacctcgccggccacccgttcgtcggcccggcc
gggcagatgctcgaccgcgcgctggcggaagccgggatcgatcgcgccgagacctacgtc
accaacgcggtgaagcatttcaaattcgtgccgcgcggcaagatccgcctgcaccagaag
ccggcgatgccggaaatcaaggcgtgccggccttggtacgagcgcgagctcgccgcggtg
cgcccgcagctcgtggtggcgatgggcgcgaccgcggcgcagagcgtgctcggcaggatc
acaccgatcaacaagaaccgtggccatctgatcgatcgcgacggcggcccgcaggtgctg
gtcacggtgcacccatcctatctgctccggctgcccgacgacgacgcaaaggcccgcgaa
tacgcacggttcgtcgacgacctgaagatcgccgccgcgcatctgaaggctggggcggcc
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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