KEGG R.palustris_BisB5: RPD

Rhodopseudomonas palustris BisB5: RPD_1903

Entry

RPD_1903 CDS R.palustris_BisB5

Gene name dnaE2

Definition error-prone DNA polymerase (EC:2.7.7.7)

Orthology K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]

Pathway rpd00230 Purine metabolism
rpd00240 Pyrimidine metabolism
rpd01100 Metabolic pathways
rpd03030 DNA replication
rpd03430 Mismatch repair
rpd03440 Homologous recombination

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:rpd00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:rpd00240]
Genetic Information Processing; Replication and Repair; DNA
replication [PATH:rpd03030]
Genetic Information Processing; Replication and Repair; Mismatch
repair [PATH:rpd03430]
Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:rpd03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: DNA_pol3_alpha tRNA_anti PHP

Other DBs NCBI-GI: 91976380
NCBI-GeneID: 4022385
JGI: RPD1903
UniProt: Q139V1

Position 2137950..2141282

AA seq 1110 aa
MKVPAYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLEAIGIADRNTLAGVVRAYSELGNE
DLIHKPRLLIGARLVFADGTPDVLAYPVDRAAYGRLCRLLSVGKLRGAKGECHLAVADLE
AFSQGLSLVLMPPYRFQASAIAAALQRLTALESGGVWLGLTPYYRGDDKRRLARLKRVAW
AARVPGIATNDVLYHHPERRALQDVLSCVREKTTIDKIGRRLEANAERHLKPAAEMARLF
RADPDAIAETLRFAAGISFTLDELKYHYPDEPVPPGKTAQQHLEDLTWEGVAEYFPAGIS
DKLHATIDKELGIIAHRGYAQYFLTVHDIVRYARSQDILCQGRGSAANSAVCYVLGITCV
DPTEIDLLFERFVSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAAIVATVIHYRPR
SAIRDVGKALGLSEDVTAALADTVWGSWGKGLNEMQVKQAGLDPHNPLIGRAVELATELI
GFPRHLSQHVGGYVLTQDRLDSYVPIGNAAMEGRTFIEWDKDDIDAIKMMKVDVLALGML
TCIRKGFDLIAQHKGVRYALSDIKSEDDNAVYQMLQRGESIGVFQVESRAQMNMLPRLKP
KCFYDLVIEVAIVRPGPIQGDMVHPYLRRRNKQEPVVYPAPAGHAGDANELEVILGKTLG
VPLFQEQAMRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFESKMVGNLVARGYDPVFA
KNCFEQIKGFGSYGFPESHAASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIV
GDARANEVEVRPVDVSFSDGQCTLEERCGKHHAVRLGFRQIDGFVWADPDEERVRREAGL
LPSEDWAARIVAARARGPFNSLERFARLTALPKRALILLADADAFRSLGLDRRAALWAVR
RLPDDVPLPLFEAASASEQLDENAAPLPQMPTAEHVVADYQTVRLSLKGHPMEFLRPLFA
AERVVTCRSISESRVSGQRMRCAGVVLVRQRPGSAKGVVFITLEDETGIANLVVWPAVME
TFRKEVMGARLLWVEGRIQASPEGVVHLVAERLSDRSFEMTRLSDNLAAPRLGELHEPLN
DDRREHPDNPAQRIRHPRDVRILPPSRDFH

NT seq 3333 nt +upstreamnt +downstreamnt
atgaaggtcccggcctatgccgagatcggcgtcaccaccaatttctcgttcctcgaaggc
ggctcgcatccgcaggactatgttcacgaggcgagccggctcgggctggaggcgatcggc
atcgccgaccgcaacacgctggccggcgtggtgcgggcctatagcgaactcggcaatgag
gacctcatccataagccgaggctgctgatcggcgcgcggctggtgttcgccgacggcacg
ccggacgtgctcgcttatccggtcgatcgggccgcctatgggcggctgtgccgtttgctc
agtgtcggcaagctgcgcggggcgaaaggcgaatgccatctcgccgtcgccgatctcgaa
gcgttcagtcagggcctgtcgctggtgctgatgccgccttatcgtttccaggccagcgcc
atcgccgccgcgttgcagcgtctgaccgcgctcgaatccggcggagtctggctcgggctg
acgccgtattatcgcggcgacgacaagcggcggctggcgcggctgaagcgcgtggcgtgg
gccgcccgggtgccgggcatcgccaccaacgacgtgctgtatcaccaccccgagcgccgc
gcgctgcaggatgtactgagctgcgtgcgcgagaagaccacgatcgacaagatcgggcgg
cggctggaggcgaatgccgagcggcatctgaaacccgcagccgaaatggcccggctattc
cgcgcggaccccgacgccatcgccgagacgttgcgctttgccgccggcatctctttcacc
ctggacgaattgaaatatcactatcccgacgagccggtgccgcccggcaagaccgcgcag
cagcatctcgaggatctgacctgggaaggcgtcgccgaatattttccggctggcatcagc
gataagctacacgccaccatcgacaaggaactggggatcatcgcgcatcgcggctatgcg
caatacttcctcaccgtgcacgacatcgttcgctacgcgcggtcgcaggacatcctgtgc
caggggcgcggctcggccgctaattcggcggtgtgctacgtcctcggcatcacctgcgtc
gatccgacagagatcgacttgctgttcgaacgtttcgtctccgaggagcgcgacgagccg
ccggacatcgacgtcgatttcgagcattcgcgccgcgaagaggtgatgcaatacatctat
cgccgctatggtcgccaccgcgctgcgatcgtcgccaccgtgattcactatcggccgcgc
tcggcgatccgcgacgtcggcaaggcgctgggcctcagcgaggacgtcaccgccgcgctg
gccgatacggtgtggggaagctggggcaagggcctgaacgagatgcaggtgaagcaggcc
gggctcgatccgcacaacccgctgatcgggcgcgcggtcgaactcgccaccgagctgatc
ggctttccgcggcatctgtcgcagcatgtcggcggttatgtgctgacccaggaccggctc
gacagctacgtaccgatcggcaacgcggcgatggaggggcgtaccttcatcgaatgggac
aaggacgacatcgacgccatcaagatgatgaaggtcgacgtgctggcgctcggcatgctg
acctgcatccgcaaagggttcgacctgatcgcgcagcacaagggcgtacgctacgcgctg
tccgacatcaagtcggaggacgacaacgccgtctaccagatgctccagcgcggcgagtcg
atcggcgtgtttcaggtcgagagccgggcgcagatgaacatgctgccgcgtttgaagccg
aaatgtttctacgacctcgtcatcgaggttgcgatcgtgcggccgggcccgattcagggc
gacatggtgcatccctatctgcgccgtcgcaacaagcaggagccggtggtgtatcccgcg
ccggctggtcacgcaggcgacgccaacgaactcgaagtcattctcggcaagacgctcggc
gtgccgttgttccaggagcaggcgatgcggatcgcgatcgaggccgcgcatttcacgccg
gacgaagccaatcagttgcgccgggcgatggcgacgttccgcaatgtcggcaccatcgga
aagttcgagagcaagatggtcggcaatctggtggcgcgcggctatgatccggtgttcgcc
aagaactgcttcgagcagatcaaggggttcggctcctacggctttcccgagagccatgct
gcgagcttcgccaagctggtctatgtctcggcctggatgaagtgcgagcatcccgacgcg
ttctgctgcgcgctgttgaattcgcagccgatgggattctatgcgccggcgcagatcgtc
ggcgacgcgcgagccaacgaggtcgaggtgcggccggtcgacgtgtcgttcagcgacggc
cagtgcacgctggaggaacgttgcggcaagcatcacgcggtgcggctcggctttcgccag
atcgacggtttcgtctgggccgacccggatgaggagcgggtgcggcgggaggcaggactt
ctgcccagcgaggattgggcggcgcggattgtcgcggcgcgtgcgcgggggccgttcaat
tcgcttgagcggttcgcgcgcctgaccgcattgccgaagcgggcgctgatcctgcttgcg
gatgccgatgcgttccgctcgctcgggctcgatcgccgcgcggcgttgtgggcggtgcgg
cgactgcccgacgacgtgccgctgccgctgttcgaagccgccagcgcatccgagcagttg
gatgagaatgcagcgccgctgccgcaaatgccgacggccgagcacgtcgtcgccgattat
caaaccgtgcggctgtcgctgaaggggcacccgatggagtttttgcgcccgctgtttgcg
gccgagcgcgtcgtgacctgccgctcgatatcggagtcccgcgtcagcggccagcggatg
cgctgcgccggcgtggtgctggtgcggcagcggccgggcagcgccaaaggcgtggtgttc
atcacgctcgaggacgaaaccggaatcgccaacctcgtggtgtggccggcggtgatggag
acgtttcgcaaggaggtgatgggtgcgcggctgctgtgggtcgagggccgaatccaggcg
agcccggaaggcgtggtgcatctggtcgccgagcgcctgagcgaccgcagcttcgagatg
acgcggctgtccgacaatctcgcggcgccgcggctcggcgaattgcacgaaccgctcaac
gacgaccgccgcgagcatcccgacaaccccgcccagcgcatccgccacccccgagacgtc
cgcatcctgccgccgtcgcgggattttcattga

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JGI-RPD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)

DBGET integrated database retrieval system