KEGG T00345: RPD

Rhodopseudomonas palustris BisB5: RPD_2161

Entry

RPD_2161 CDS T00345

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rpd Rhodopseudomonas palustris BisB5

Pathway

rpd03410	Base excision repair
rpd03420	Nucleotide excision repair
rpd03430	Mismatch repair
rpd03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rpd03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rpd03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rpd03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rpd03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(2415919..2416860)

AA seq 313 aa
MAKRARVVRIHAEGAVPAPMPGFVQPQLATLRTRPPSGAGWIHEIKLDGYRGQAHVGPQG
TRIYTRGGHDWSKMFAPLVAALSDAAVDEAVIDGEIVVVVDERTDFGALQADLAARRADR
MLFYAFDLLHLDGYDLGPVPLTERKRLLKGLFDRGLEPPVVYSDSMDDGEAMFDGAGRLG
WEGIVSKRADAPYRSGDRSLDWQKIKTSKREHLVIVGYVPATGGIAALHVARRDGDSLVY
AGKVGTGFSVKVGADLRRRLAEIETAAPPIAKPPPRHRPRWVRPVMSADVEYRDITASGH
LRHASFKGLAKAP

NT seq 942 nt +upstreamnt +downstreamnt
atggcgaagcgtgcgcgtgttgtccgaatacatgcagagggggccgtacctgccccgatg
cctggatttgtccagccccagcttgccaccctgcggacacgtccaccgtccggtgccgga
tggatccacgagatcaagttggacggataccgcggccaggcgcacgtcggcccacagggg
acccgcatttacacccgcggaggtcatgactggtcgaagatgttcgccccgctggtcgcc
gccctgtcggatgccgccgtcgacgaggcggtgatcgacggcgagatcgtggtggtcgtt
gatgagcggacggatttcggagccctgcaggccgaccttgcggcaagacgtgccgaccgc
atgctgttctacgcattcgacctgctgcacctcgacggctacgacctcgggccggtcccc
ctgaccgagcgcaagcggcttctcaagggcctcttcgaccgtggcctggagccaccggtc
gtctacagcgacagcatggacgacggcgaagcaatgtttgatggggctgggcgcctcggg
tgggaaggcatcgtcagcaagcgcgccgacgcgccctatcgcagcggcgaccggagcttg
gactggcagaagatcaagacctcaaagcgcgagcatctcgtcatcgtcggctacgtgccg
gcgacaggcggcatcgccgcgctgcacgtcgccaggcgcgacggcgacagcttggtctac
gcaggaaaagtcggcaccgggttctcggtcaaggtaggcgcggatctgcgccggcgactg
gcggagatcgagacagcagcaccgccaatcgccaagccgccaccacggcaccggccgcgg
tgggtccggccggtgatgagcgccgatgtcgaataccgcgacatcaccgccagcggtcat
ctgcgccacgcatctttcaaggggctcgcgaaggctccgtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RPD (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

Download RDF

DBGET integrated database retrieval system