KEGG T00345: RPD

Rhodopseudomonas palustris BisB5: RPD_3298

Entry

RPD_3298 CDS T00345

Definition

AMP-dependent synthetase and ligase

Orthology

K01895

acetyl-CoA synthetase [EC:6.2.1.1]

Organism

rpd Rhodopseudomonas palustris BisB5

Pathway

rpd00010	Glycolysis / Gluconeogenesis
rpd00620	Pyruvate metabolism
rpd00640	Propanoate metabolism
rpd00680	Methane metabolism
rpd01100	Metabolic pathways
rpd01110	Biosynthesis of secondary metabolites
rpd01120	Microbial metabolism in diverse environments

Class

Metabolism; Carbohydrate metabolism; Glycolysis / Gluconeogenesis [PATH:rpd00010]
Metabolism; Carbohydrate metabolism; Pyruvate metabolism [PATH:rpd00620]
Metabolism; Carbohydrate metabolism; Propanoate metabolism [PATH:rpd00640]
Metabolism; Energy metabolism; Methane metabolism [PATH:rpd00680]

SSDB

Motif

Pfam:

AMP-binding AMP-binding_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(3651673..3653394)

AA seq 573 aa
MTTFQQARAFLLEHRTDYAAAVAGFRWPDPAPFNWALDWFDAELATNADSRDRAALWIVD
GITGVELKPSFATMSKRSNQVANYLRAQGLKRGDHLLLLLGNVVPLWETMLAAIKLGIVV
IPATTLLTPDELRDRLDRGAAKAVVAAPDQVAKFADLGGDSLIRIVVGSPQDGWRGYDEA
SQQSDSFTPDGPTQADDPMLLYFTSGTTAKPKLVRHSQRSYPVGALSTMFWLGLQPGDVH
LNISSPGWAKHAWSCFFAPWNAGATVFVVNQPRFDAKSLLATIGRCGVTTLCAPPTVWRM
FIQEKLADYKVSLREVCGAGEPLNPEVIDQVNAAWGATIRDGYGQTETTAMVGNSPGQPV
KIGSMGRPLPGYVVRITDADGHPAKEGEITLALGDARPAGLMQGYQGEGGKLSGAEGDIY
RSGDVAFADDDGYLTFVGRTDDVFKSSDYRISPFELESILLEHEAVAEAAVVPSPDAIKL
AIPKAYVLLTADAERSRDTALSIFRHMQQRLAPFKRIRKLELVTELPKTISGKIRRVHLR
RLEHDDDRADTLRGVEYREEDFPELKAAPAKEG

NT seq 1722 nt +upstreamnt +downstreamnt
atgaccaccttccagcaagcccgtgcctttctactcgaacatcggaccgactacgccgcg
gccgtcgccggcttccgctggccggatccggcgccgttcaactgggcgctcgactggttc
gacgccgaactcgcgaccaacgccgacagccgtgatcgcgccgcgctgtggatcgtcgac
ggcatcaccggcgtcgagctcaagccgagctttgcgacgatgtcgaagcgctccaatcag
gtcgcgaactatctgcgcgcgcagggcctgaaacgcggcgatcatctgctgctgctgctc
ggcaacgtcgtgccgctgtgggagacgatgctggcggcgatcaagctcggaatcgtggtg
atcccggcgaccacgctgctgacgcccgacgaattacgcgaccggctcgaccgcggcgcc
gccaaggcggtggtcgcggcgccagatcaggtggcgaaattcgccgatctcggcggcgat
agcctcatccgcatcgtggtcggcagcccgcaggacggctggcgtggttacgacgaggcc
tcgcagcaatccgacagcttcacgccggatgggccgacccaggccgacgatccgatgctg
ctgtacttcacctccggcacgacggcgaagccgaagctggtgcggcacagtcagcgctct
tatccggtcggcgcgctgtcgacgatgttctggctcggtctgcagccgggcgacgtccat
ctcaacatttcgtcgccaggctgggccaagcacgcctggagctgcttcttcgcgccgtgg
aacgccggcgccaccgtgttcgtggtcaaccagccgcggttcgacgccaagagcttgctc
gcgaccatcggccgctgtggcgtcaccacactgtgcgcgccgcccacggtgtggcggatg
ttcattcaggagaagctcgccgactacaaagtgagcctgcgcgaagtgtgcggcgccggc
gagccgctcaatccggaagtgatcgatcaggtcaacgcggcatggggcgccacgatccgc
gacggctacggccagaccgagaccaccgcgatggtcggcaattcgcccggccagcccgtg
aagatcggctcgatgggccggccgctgccgggctacgtcgtcaggatcaccgacgccgac
ggccatcccgcgaaggaaggcgagatcacgctggcgctcggcgatgcgcgcccggccggc
ttgatgcagggctatcagggcgaaggcggcaaattgtcgggcgccgagggcgatatctat
cgcagcggcgacgtcgcattcgccgatgacgacggttatctcaccttcgtcggtcggacc
gatgacgtcttcaaatcgtcggactaccggatcagcccgttcgagctggagagcatcctg
ctcgaacacgaggccgtcgccgaagccgctgtggtcccgagccccgatgcgatcaagctg
gcgattccgaaagcctatgtgctgctcacggccgacgccgagcgctcgcgcgacacggcg
ctgtcgatcttccgccacatgcagcaacgtctggcgccgttcaagcgcatccgcaagctc
gagttggtgaccgaactgccgaagacgatctccggcaagatccgccgcgtgcatctgcgt
cgcctcgaacacgacgacgaccgcgccgacaccctgcgtggcgtcgagtatcgcgaagag
gattttccggagttgaaagccgcgcctgcgaaggaggggtga

All links

Pathway (7)   
   KEGG PATHWAY (7)   
Chemical substance (10)   
   KEGG COMPOUND (10)   
Chemical reaction (6)   
   KEGG ENZYME (1)   
   KEGG REACTION (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RPD (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (33)   

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