KEGG   Rhodopseudomonas palustris BisB5: RPD_3367
Entry
RPD_3367          CDS       T00345                                 
Name
(GenBank) ATP-dependent DNA helicase, Rep family
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
rpd  Rhodopseudomonas palustris BisB5
Pathway
rpd03420  Nucleotide excision repair
rpd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rpd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RPD_3367
   03430 Mismatch repair
    RPD_3367
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpd03400]
    RPD_3367
Enzymes [BR:rpd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RPD_3367
DNA repair and recombination proteins [BR:rpd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RPD_3367
   MMR (mismatch excision repair)
    Other MMR factors
     RPD_3367
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 AAA_30 UvrD_C_2 PcrA_UvrD_tudor DUF3553 AAA_11 DUF3482
Other DBs
NCBI-ProteinID: ABE40591
UniProt: Q133Z8
Position
3733693..3736236
AA seq 847 aa
MTEPNKRANLDLSGYQPAAGGIAARARASAAPAYLSGLNPEQREAVESLDGPVLVLAGAG
TGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQMLGQAVEGMPWLGTFH
SIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQLLAADNIDDKRWPARMLAGLIDGWKN
RGLTPSQVPAGEAASFGNGRGGKLYAAYQERLKVLNAADFGDLLLENIRLFREHPDVLRQ
YQGRFKFILVDEYQDTNVAQYLWLRLLSQAPSQSSLPGSTRQSITSREDGSPGLDASRRP
GDDDKASGGVQTAAPKNICCVGDDDQSIYGWRGAEVDNILRFDHDFPGAKVIRLERNYRS
TGHILAAASHLIAHNEGRLGKTLRTEDVDGEMVTVTGAWDSEEEARGIGEEIEQLQRQGH
KLNEIAILVRASFQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRVINSPADDL
AFERIVNVPKRGLGDATVQMLHDHARKRKMPLFEAARLVIDTDEMKPKARSSLRGLIENF
ERWQVQRNALSHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENLQGF
LEHISLVMDRDGAADEDAVSVMTLHSAKGLEFETVFLPGWEEGLFPHQRALDDQGRAGLE
EERRLAHVGITRARRRAKLYFATNRRIHGTWNTTIPSRFLDELPQANVEITESKGGSGWG
GMSGYGPSRFDNVESFGSSYSTPGWQRAQAQRGKNGGSRSGGGGFSESSSPFSDRGASPG
ARRAPFTIEGELVAKSTGAESDFTLSDRVFHQKFGYGQVTKIDGNKLTIAFDKAGEKKVV
DSFVQRV
NT seq 2544 nt   +upstreamnt  +downstreamnt
atgactgaaccgaacaagcgcgccaatctcgacctttccggctatcagcccgctgccggc
ggcatcgccgcgcgggcgcgcgcgtccgcggcgcccgcctatttgtcgggactcaatccg
gagcagcgcgaggcggtcgagtcgctcgacggcccggtgctggtgctcgccggcgccggc
accggcaagacgcgggtgctgaccacgcggatcgcgcacatcctctccaccggccgggcg
cgccccgccgagatcctgtcggtgaccttcaccaacaaggccgcgcgcgagatgaagctg
cggctcggccagatgctcggccaggcggtcgagggcatgccgtggctcggcaccttccat
tcgatcggcgggcgaatcctgcgctatcacgccgagctggtgcagctcacctcgaacttc
accgtgctcgacaccgacgaccagatccggctgctgaagcaattgctcgccgccgacaat
atcgacgacaagcgctggccggcgcggatgctggccggcctgatcgacggctggaagaac
cgcgggctgacgccgtcgcaggtgcccgccggcgaagccgcgagcttcggcaacggccgc
ggcggcaagctctacgccgcctatcaggaacggctgaaagttctcaacgctgcggatttc
ggcgacctgctgctggagaacatccggctgttccgcgagcaccccgacgtgctgcggcag
tatcagggccgcttcaaattcatcctggtcgacgagtatcaggacacgaacgtcgcgcag
tatttgtggctgcggctgctgtcgcaggcgccatcacaatcgtcattgccgggctcgacc
cggcaatccatcacatctcgagaagatggatcaccgggtctcgacgcttcgcgtcggccc
ggtgatgacgataaagcaagcggcggcgtccaaaccgcagcccccaaaaacatctgctgc
gtcggcgacgatgatcagtcgatctatggctggcgcggcgccgaggtcgacaacatcctg
cgcttcgaccacgacttccccggcgccaaggtgatccggctcgaacgcaactatcgctcg
accggccacatcctagccgccgcctcgcatctgatcgcgcacaacgaggggcggctcggc
aagacgctgcgcaccgaggacgtcgacggcgagatggtcaccgtcaccggcgcatgggac
tccgaagaagaagctcgcggcatcggcgaggagatcgagcagctgcagcgccagggccac
aagctcaacgaaatcgccattctggtgcgcgcctcgttccagatgcgcgaattcgaagac
cgcttcgtgacgctcggcctgccctaccgcgtgatcggcggaccgcgcttctacgagcgc
gccgaaatccgcgatgcgctggcttatctgcgcgtgatcaattcgcccgccgacgacctc
gccttcgagcgcatcgtcaatgtgccgaagcgcggcctcggcgacgccaccgtgcagatg
ctgcacgaccacgcccgcaagcggaagatgccgctgttcgaggcggcgcggctggtgatc
gacaccgacgagatgaagcccaaagcgcggagttcgctgcgcggcctgatcgagaatttc
gagcgctggcaggtgcagcgcaatgcgctgtcgcataccgaactcgccgagatcgtgctc
gacgagagcggctacaccgagatgtggcagaaggaccgctccgccgatgccgccggccgg
ctcgaaaacctcaaagaactcgttcgctcgatggaagagttcgagaacctgcaaggtttc
ctcgaacacatctcgctggtgatggaccgcgacggcgccgccgacgaggatgcggtcagc
gtgatgacgctgcactccgccaaggggctggagttcgagaccgtgttcctgcccggctgg
gaggaaggcctgtttccgcatcagcgcgcgctcgacgatcagggccgcgccgggctggaa
gaggaacgccgtctcgcccatgtcggcattacgcgcgcgagacgccgagcgaaattgtac
ttcgccaccaaccgccggattcacggcacctggaacaccacgatcccgtcgcgtttcctc
gacgaactgccgcaggccaatgtcgagatcaccgagtcgaaaggcgggtccggctggggc
ggcatgagcggctacggcccgtcgcgcttcgacaatgtcgagtcgttcggctcgagctat
tccaccccgggctggcagcgcgcccaagcgcaacgcggcaagaacggcggcagccgcagc
ggcggtggcggcttcagcgagagtagctcgccgttctcagaccgcggcgcatccccgggc
gcccgccgggccccgttcacgatcgagggcgagctggtggcgaaatccaccggcgccgaa
tccgacttcacgctgagcgatcgcgtcttccatcagaaattcggctacggccaggtgacg
aaaatcgacggcaacaaactcaccatcgccttcgacaaggccggcgagaagaaggtggtc
gatagtttcgtgcagcgggtgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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