KEGG T00345: RPD

Rhodopseudomonas palustris BisB5: RPD_3984

Entry

RPD_3984 CDS T00345

Definition

AMP-dependent synthetase and ligase

Orthology

K01895

acetyl-CoA synthetase [EC:6.2.1.1]

Organism

rpd Rhodopseudomonas palustris BisB5

Pathway

rpd00010	Glycolysis / Gluconeogenesis
rpd00620	Pyruvate metabolism
rpd00640	Propanoate metabolism
rpd00680	Methane metabolism
rpd01100	Metabolic pathways
rpd01110	Biosynthesis of secondary metabolites
rpd01120	Microbial metabolism in diverse environments

Class

Metabolism; Carbohydrate metabolism; Glycolysis / Gluconeogenesis [PATH:rpd00010]
Metabolism; Carbohydrate metabolism; Pyruvate metabolism [PATH:rpd00620]
Metabolism; Carbohydrate metabolism; Propanoate metabolism [PATH:rpd00640]
Metabolism; Energy metabolism; Methane metabolism [PATH:rpd00680]

SSDB

Motif

Pfam:

AMP-binding AMP-binding_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(4430991..4432598)

AA seq 535 aa
MLTETSDYDSLYRDFRWSVPARFNIATAACDRHAIGDKPALIYVDEAGAVTRMSFAEIAS
ASRRFANVLKAAGLARGDRVAVFLSQSIELPIAHLAAFRSGLVSVPLFTLFGEDALEFRL
SNSGARAVITDESGLPKLLRIRDRLPELRQIYVTGGAAPSGVELFWSKLDAASDAFETVD
TSCDDPAIIIYTSGTTGNPKGALHAHRVLLGHLPNVEMAHDFFPRPGDLMWTPADWAWIG
GLFDALFPAWYHGVAMLGHRARKFEPQAAMQLMADHGVRNVFLPPTALKLMRQADVKHPG
VKLRSIFTGGESLGGELLAWVRATFGVDAHEIYGQTECNLVVGNNARLFPIRPGSMGKAT
PGFDVRIVDEDGRELPCGERGIIGVRQPNPCTMLEYWKNPEATAKKFAGGFLLTGDLARQ
DGDGYFWYDSREDDVITSAGYRIGPSEIEHTLLKHPAVAFAAVVGVPDPIRTEAIKAWIV
LRPGFAKGDALAREIQNFVKVQLAAHEYPRHVEFTETLPMTATGKVLRRELRAKG

NT seq 1608 nt +upstreamnt +downstreamnt
atgctcaccgaaacctccgactacgatagcctctaccgcgatttccgttggtcggttccc
gcccgcttcaacatcgcgaccgcggcgtgcgatcggcacgcgatcggcgacaagccggcg
ctgatctatgtcgacgaagccggcgcggtcacgcggatgtcgttcgccgagatcgccagc
gcctcgcgccgcttcgccaatgtgctgaaggccgccggcctcgcgcgcggcgaccgcgtc
gcggtgttcctgtcgcaatcgatcgagctgccgatcgcgcatctcgcggcgttccgttcg
gggctcgtctcggtgccgttgttcacgctgttcggcgaggacgcgctggagtttcgtctg
tcgaattccggcgcccgcgcggtgatcaccgatgagagcgggctgccgaagctgctcagg
atccgcgaccgcctgccggagttgcggcagatctacgtcaccggaggcgcggcgccgtcc
ggcgtcgagctgttctggtccaagctcgatgcggcgtccgatgcgttcgagacggtcgac
acctcctgcgacgatcccgcgatcatcatctacacctcgggcacgaccggtaacccgaaa
ggcgcgctgcacgcccatcgcgtgctgctcggccatctgccgaatgtcgagatggcgcac
gacttctttccgaggcccggcgacctgatgtggacgccggcggattgggcgtggatcggc
ggattgttcgatgcgctgtttccggcctggtatcacggcgtcgcgatgctcggccaccgc
gccagaaagttcgagccgcaggccgcgatgcagctgatggccgatcacggcgtccgcaac
gtgttcctgccgccgaccgcgctgaagctgatgcggcaggcggatgtgaaacatcccggc
gtcaagttgcgcagcatcttcaccggcggcgagtcgctcggcggcgaattgctggcctgg
gtgcgcgccactttcggcgtcgatgcgcacgagatctacggccagaccgaatgcaatctg
gtggtcggcaacaacgcaaggctgtttccgatccgtcccggctcgatgggcaaggcgacg
ccgggtttcgatgtccgcatcgtcgatgaagacggccgggaactgccgtgcggcgagcgc
ggcatcatcggcgtgcgccagcccaatccctgcaccatgctggaatattggaagaacccg
gaggcgaccgcgaagaaattcgcaggcggcttcctgctcaccggagatctggccaggcag
gacggcgacggttacttctggtacgacagccgcgaggacgatgtcatcacctcggccggc
tatcgcatcggcccgtcggagatcgagcacacgctgctgaagcatccggcggtggcgttc
gccgcggtggtcggcgtgcccgatccgatccgcaccgaagcgatcaaggcctggatcgtt
ctgcgcccgggcttcgccaagggcgacgcgttggcgcgcgagatccagaatttcgtcaag
gtccagcttgccgcccacgaatatccccgccacgtcgaattcaccgagacgttgccgatg
accgcgaccggcaaggtgctgcgccgcgagctgcgggcgaaggggtag

All links

Pathway (7)   
   KEGG PATHWAY (7)   
Chemical substance (10)   
   KEGG COMPOUND (10)   
Chemical reaction (6)   
   KEGG ENZYME (1)   
   KEGG REACTION (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RPD (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (33)   

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