KEGG T00400: RPE

Rhodopseudomonas palustris BisA53: RPE_0725

Entry

RPE_0725 CDS T00400

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rpe Rhodopseudomonas palustris BisA53

Pathway

rpe03410	Base excision repair
rpe03420	Nucleotide excision repair
rpe03430	Mismatch repair
rpe03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rpe03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rpe03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rpe03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rpe03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(804532..806295)

AA seq 587 aa
MNRFAELLDRLAYEPGRNAKLRLITNYFRATEDPDRGFALAALTGALSFRHAKPGLIRDL
IASRADPVLFALSYDYVGDLSETVALMWPKAIFSPPSCGEGTGVGVPAISSASGHPHPSP
PHKGEGAGRAWGDHNNPPPPTLTEVVTTLATLGKAELPAQLMRWLDELDETGRWALLKLV
TGSLRIGISARLAKTAAAALGDKDPHEVELIWPGLVPPYLDLFAWLEGRGPEPVNRDPAP
FRPVMLAHAIDDTDFAALDAADYVAEWKWDGIRVQAVSGRDVHGTTVARLYSRSGEDITK
SFPDLLPSLRLPGAIDGELLIVRDGLVQSFNVLQQRLNRKSVTPKLMQEFPIHLRAYDLL
GDGDNDLRNLPFEQRRAKLESFVAALDDPRIDLSATIAFADWDALSAARRDPASAGAGHD
ADAVEGVMLKRRDALYLPGRPKGQWWKWKHDPHLVDAVLMYAQRGHGKRSSYYSDYTFGL
WTQSDAGEVLVPVGKAYFGFTDEELLQIDRFVRRHTTEKFGPVRHVVHEPDQGLVLEVAF
EGLQRSPRHKSGVAMRFPRINRLRWDKPPRDADRLATLERMLDKASS

NT seq 1764 nt +upstreamnt +downstreamnt
atgaaccgcttcgcagagttgctggatcgcctcgcctatgagcccggccgcaacgccaaa
ctgcggctgatcaccaattacttccgcgccaccgaagaccccgaccgcggttttgcactg
gcggcgctgaccggcgcgctgtcgttcaggcacgccaagccgggactaatccgcgacctg
atcgcgtcgcgcgccgacccggtgctgttcgctttgtcgtacgactatgtcggcgacctg
tcggaaacggtggcgctgatgtggccgaaggcgatcttctcccctccctcttgtggggag
gggacgggggtgggggtccccgcaatcagctctgcctcggggcacccccaccccagccct
ccccacaagggggagggagcaggccgtgcttggggcgaccacaacaatccgccgccgccg
acgctcaccgaggtcgtcactacgctggcgacactcggcaaggcggagctgccggcgcag
ctgatgcgctggctcgatgagctcgacgagaccgggcgctgggcgctgctgaagctggtc
accggaagtttgcggatcggcatttcggcgcggctggcgaagaccgcggcggcggcgctg
ggcgacaaggacccgcacgaggtcgaactgatctggccggggctcgtcccgccctatctc
gatctgttcgcctggctggagggccgcggccccgagccggtcaatcgcgatccggcgccg
ttccggccggtgatgctggcgcatgcgatcgacgacaccgatttcgcagcactcgatgcc
gccgactacgtcgccgaatggaaatgggacggcatccgcgtgcaggcggtgagcggccgc
gacgtccatggcacaacggtggcgcgactgtattcgcgcagcggcgaggacatcaccaaa
agcttccccgacctgttgccgtcgctgcggctgcccggcgcgatcgacggcgaattgctg
atcgtgcgcgacgggttggtgcaatccttcaacgtgctgcagcagcggctgaaccgcaaa
tcggtgacgccgaagctgatgcaggagtttccgattcatctgcgcgcctacgacctgctc
ggcgacggcgacaacgatctgcgcaacctgccgttcgagcagcggcgcgccaaactcgaa
tccttcgtcgctgcattggacgatccgaggatcgacctgtcggcgacaattgccttcgcc
gactgggacgcgctgtcggcagcgcggcgcgatccggcatcggccggtgcgggacacgac
gccgacgcggtggaaggcgtgatgctgaagcggcgcgacgcgctgtatctgccgggccgg
ccgaaggggcaatggtggaagtggaagcacgatccgcatctggtcgacgcggtgctgatg
tatgcccagcgcggccacggcaagcgctcgtcctattattccgactacacgttcgggctg
tggacgcagagcgacgccggagaggtgctggtgccggtcggcaaagcctatttcggcttc
accgacgaggaactgctgcagatcgaccgcttcgtccgccgccacaccaccgagaagttc
gggccggttcgccatgtggtgcacgagccggatcaggggttggtgctggaagtggcgttc
gaggggctgcagcgctcgccgcggcacaaatccggcgtggcaatgcgctttccgcgcatc
aatcggctgcgctgggacaagccgccgcgcgacgccgaccggctcgcgacgctggagcgg
atgctggacaaggcctcgtcgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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