KEGG T00925: Rpic12D

Ralstonia pickettii 12D: Rpic12D_2722

Entry

Rpic12D_2722 CDS T00925

Gene name

ddl

Definition

D-alanine--D-alanine ligase (EC:6.3.2.4)

Orthology

K01921

D-alanine-D-alanine ligase [EC:6.3.2.4]

Organism

rpf Ralstonia pickettii 12D

Pathway

rpf00473	D-Alanine metabolism
rpf00550	Peptidoglycan biosynthesis
rpf01100	Metabolic pathways

Class

Metabolism; Metabolism of other amino acids; D-Alanine metabolism [PATH:rpf00473]
Metabolism; Glycan biosynthesis and metabolism; Peptidoglycan biosynthesis [PATH:rpf00550]

SSDB

Motif

Pfam:

Dala_Dala_lig_C Dala_Dala_lig_N ATP-grasp_4 ATP-grasp_3 ATP-grasp ATPgrasp_Ter CPSase_L_D2 RimK GARS_A

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1:complement(2873060..2874055)

AA seq 331 aa
MTTGPFVPNPTIDPKSLGKVGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQ
PVADLAKQGFDRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQ
THGLPTPDFVMLHAGADWQAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAAR
LDRDVMAEQFIEGDELTCPIIGEGESATALPLIRIVAPQANYDYQNKYFTDDTRYECPAP
IAVDVAARVQALVVQAYRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGA
RAAGISYEDFVLQLAASASLELHASTDWKPE

NT seq 996 nt +upstreamnt +downstreamnt
atgacgaccggtccgtttgttcccaatccgacgatcgatccgaagtccctcggcaaggtg
ggcgtgctcatgggcggtcgttcggccgagcgcgaaatctcgctgatgtccggcaacggc
gtgctggctgcgctgcgcgcgcgcggcgtcgatgcgcacccgttcgacccggggctgcag
cccgtggccgatctggccaagcaagggttcgaccgcgtggtgatctctttgcacggccgc
tttggcgaagacggcacgatccagggcctactggagcaattcggcattccgtacaccggc
agcggcgtactcgcatctgcgctggcgatggacaaggaagccaccaagcgccaatggcag
acccacggcctgcccacgcccgatttcgtgatgttgcatgccggcgccgactggcaagcc
gtggccgaccgcctgggcctgccgctgatcgtcaagcccgcgcgtgaaggttcgtcgatc
ggtctgaccaaggtcacgagtgttgccgagctgcccgccgcctacgaaaaggccgcgcgc
ctggaccgcgatgtgatggccgagcagttcatcgaaggcgacgagctgacctgcccgatc
atcggcgaaggcgaaagcgcaaccgcgctgccgctcatccgcatcgtcgcgccgcaggcc
aactacgactaccagaacaagtacttcaccgacgacacgcgctacgaatgcccggcaccg
attgccgtcgacgtggccgcgcgcgtgcaggcgctggtggtgcaggcgtatcgcgggctg
ggctgccgcggctggggtcgtgccgacatcatgctgcgcaagtccgacaacgcgccgttc
ttgttggagatgaacacgtcgccgggcatgaccggccattcgctggtgccgatgggcgcg
cgcgccgcaggcatcagttatgaagatttcgtgttgcaactggcggcgagcgcgtcgctg
gagctgcacgcgagcaccgactggaaacccgagtaa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RPF (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (27)   

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