KEGG T00762: Rpic

Ralstonia pickettii 12J: Rpic_0501

Entry

Rpic_0501 CDS T00762

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rpi Ralstonia pickettii 12J

Pathway

rpi03410	Base excision repair
rpi03420	Nucleotide excision repair
rpi03430	Mismatch repair
rpi03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rpi03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rpi03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rpi03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rpi03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1:complement(534186..536777)

AA seq 863 aa
MPRHLADYRSKRDFTQTQEPAGARRKADEQRDHGALHFVIQKHDATRLHYDFRLELDGTL
KSWAVPKGPSLDPADKRLAVHVEDHPLDYADFEGHIPEGQYGGGDVIVWDRGTWRPHGDP
RKAYRDGKLKFDLHGEKLHGAWALVRTHLHGTGRHPKEQWLLIKERDDQVRASSDYDVTQ
ALPASVITGENVGAKPKAKADGRKTQRADPAQVQPPAGAVPGTLPKTLEPQLATLVDAPP
RQGEWNYEVKFDGYRILARIDGNTVRLFSRNGRDWTAKLPRQARTLQALGLREAWLDGEV
VVMGERGVPDFQALQNAFETAHAEHIAYYLFDIPFCNGMDLRGVPLRERRALLERILDAA
PGNLDREAVLFSGTFHAAPEDLLSSACSMSLEGVIGKRADAPYRAGRSPAWIKLKCGQRQ
EFVIGGYSAPKGSRSGFGALLLGVYDDAGKLRYAGRVGTGFNETSLHALHHELTGLTVDT
PPFANPPTGSDARDVQWVKPERVAEIAFAEWTREGIVRQAVFQGLRDDKLARNIVREQAK
PPSAAARKETRAVNAAERKVRPGAERIADVDVTHPDRVIEKASGTTKADLARYYAGVAEW
MLPHLRNRPTSLVRAPDGIDGERFFQKHSAALKLQGITQLDPSLDPGHPSLLAINSAEAL
VGAVQMGTVEFHTWNALADRIEQPDRIVFDIDPDPALPFARVIEATQLMLAMLDELGLKA
FLKTSGGHGMHVVVLLTRREAAGWDTLKTFAQAVVQHMAATFPDRFVAKMGPQNRVGKIF
IDYLRNNRGASTVAAYSVRARTGLPVSVPIRHDELEGLQSSAQWTLRTLPERLAKLKGDP
WAAYAGTRQSVTADMRKRVGADD

NT seq 2592 nt +upstreamnt +downstreamnt
gtgccacgccatctcgccgactaccgcagcaagcgcgatttcacgcagacccaggaaccc
gccggcgcgcgccgcaaagccgacgagcagcgtgaccatggcgccctgcacttcgtgatc
cagaagcacgacgcaacgcgactgcactacgacttccggctggaactcgacggcacgctc
aagagctgggccgtccccaagggcccgagcctggaccccgccgacaagcgcctcgcggta
catgttgaagaccacccgctggactacgcggatttcgaaggccatatccccgaaggacaa
tacggcggcggcgacgtgatcgtgtgggaccgcgggacatggcgcccgcatggcgatccg
cgcaaggcctatcgcgacggcaagctcaaattcgacctccatggcgagaagctgcatggt
gcatgggcgctggtacgcacgcatttgcacggcacgggcagacatccgaaagaacagtgg
ctgctgatcaaggaacgcgacgaccaggtgcgcgcatcgagcgactacgacgtgacacag
gcgctgcccgccagcgtgatcaccggagagaacgtcggcgcaaaaccgaaggctaaggcc
gatggccgcaagacccagcgtgccgatccggcacaagtccagccgcccgccggtgccgtg
cccggcacgttgccgaaaacgctggagccgcagcttgccacgctcgtcgatgcgccgcca
aggcaaggcgagtggaattacgaagtgaagttcgacggctaccgcatcctggcgcgcatc
gacggcaacaccgtgcgcctgttcagccgcaacggccgcgactggacggccaagctgccg
cgtcaggcgcgcacgctgcaggcgctgggcctgcgcgaggcgtggctcgacggcgaagtc
gtggtgatgggcgagcgcggcgtgcccgacttccaggcgctgcagaacgccttcgaaacc
gcgcatgccgaacacattgcctactacctgttcgacatcccgttctgcaacggcatggac
ttgcgcggtgtgccgttgcgcgagcggcgggcgctgcttgagcgcattctcgatgccgcc
ccgggcaacctggaccgcgaagcggtgctcttctcagggacatttcacgcggcacccgaa
gacttgctgtcttccgcgtgcagcatgtcgctcgaaggggtgatcggcaagcgcgccgat
gcgccgtaccgggccggccgcagccctgcctggatcaagctcaaatgcgggcagcggcag
gaattcgtgatcggcgggtacagtgcgcccaagggtagccgcagcggcttcggtgccctg
ctgctcggcgtgtatgacgacgcgggcaagctgcgctatgcgggccgtgtcggcacgggc
ttcaacgagacgagtctgcacgctttgcaccacgagctgacgggtctgaccgtcgacacg
ccgcccttcgccaacccgcccaccggcagcgatgcgcgcgacgtgcaatgggtgaagccc
gaacgcgtggcggaaatcgcctttgccgaatggacgcgcgaaggcatcgtgcggcaagcc
gtgttccaaggtttgcgtgacgacaaactcgcgcgcaacatcgtgcgtgaacaagccaag
ccgcccagcgctgccgcacgcaaggagacccgcgccgtgaatgctgccgaacgcaaggtg
cgccccggtgccgaacgcatcgccgatgtggacgtcacgcatccagatcgcgtgatcgag
aaagccagtggcaccaccaaggcggacctggcgcgctattacgccggtgtggccgaatgg
atgctgccgcatcttcgcaaccgcccgacatcgctcgtacgcgcgcccgacggcatcgac
ggcgagcgcttcttccagaagcattccgccgcgctcaagctgcagggcatcacgcagctg
gacccatcgctcgacccggggcatccgtcgctgcttgcgatcaactcggccgaggccctg
gtcggcgcggtgcagatgggcacggtggagttccacacgtggaatgcgctggccgaccgc
atcgaacaacccgaccgcatcgtcttcgatatcgacccggacccggcgctgcctttcgcg
cgcgtgatcgaggccacgcagctcatgctggccatgcttgatgaactcggcctgaaggcc
ttcctgaaaaccagcggtgggcatggcatgcacgtggtggtgctgctcacgcgccgcgaa
gccgctggctgggacacgctcaaaacgttcgcgcaagccgtggtgcaacacatggccgcg
accttccctgaccgctttgtcgccaagatggggccgcagaaccgcgtgggaaaaatcttc
atcgactatctgcgcaacaaccgcggtgcgagcacggtggccgcctattcggtgcgcgcg
cggacggggttgccagtgtccgtgccgatccgccatgacgagctggaagggctgcagtcg
tctgcccagtggacgctgcgcacgctgcccgaacggctcgccaagctcaagggcgatcct
tgggccgcctatgccggtacgcgtcaatcggtcacggccgacatgcgcaaacgcgttggc
gccgatgactga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RPI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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