KEGG R.prowazekii: RP140

Rickettsia prowazekii: RP140

Entry

RP140 CDS R.prowazekii

Gene name rpoB

Definition DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Pathway rpr00230 Purine metabolism
rpr00240 Pyrimidine metabolism
rpr01100 Metabolic pathways
rpr03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:rpr00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:rpr00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:rpr03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1
RNA_pol_Rpb2_2 RNA_pol_Rpb2_45
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 15604016
NCBI-GeneID: 883777
UniProt: O52271

Position 160650..164774

AA seq 1374 aa
MVSLRDNIESQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVDECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDFEFDAKDIIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYY
NSVTYKFVKNKGWSVKFIPQHITAHRLTSDLVDADTGNVLLKAGQKITPRLAQKYFGVGL
NNILVTHETLIGKYLSEDLRDPASDEVLAKIGEMITSDMLKVINDLKIKNVNVLVINPQS
GSYIRNTLFADKNQDREAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRI
KMNSRLELNISEEVTVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKNGYVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNF
VMVEPDEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGT
GVEGVVAKDSGASVLALHDGIVERVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQ
RAIAIEKQQIEKLAKDRDDELEIIEHFVFSWLEKLLVGHVIINGPKQITAGQTITTEMLK
GLSKGQLWQITVEDANVMNEIEQIKIHYDEKKYALDKRFTTKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEYKDNHIDIEEIKKFLLELYGKDINYILEGSEEEIIS
FCNKVSKGVYFATPVFDGAKVQDVKDMLELAGQDLSGQVKLIDGRTGEYFDRLVTVGHKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTPSK

NT seq 4125 nt +upstreamnt +downstreamnt
atggtttcattaagggataatatagaatcacaacccttgtcacataatagaagaataaga
aagaattttggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgagaaaaattttctacagttaaatattaaagattctgaaagaaaaaacaaa
ggtttacaatctatattaaactcaatttttcctatttcagattcctcaaatattgcaaat
ttagaatttgtcaaatatgaatttgatactccaaaatatgatgtagacgagtgtagtcaa
agaagtttaagttatgcagctcctcttaaagttactttaagattaagtatttgggatata
gacgaagatacaggtactagagaaattaaaggaattaaagagcaagaagtatatatgggc
gatattccattaatgactaaaaatggtacttttattatcaacggtacggaaagagtagtt
gtatcacaaatgcatcgctcaccaggtgtattcttttatcatgatgaaggaaaagtgcac
tcttccggcaagcttttatattctgctcgtgttattccatatagaggatcttggcttgat
ttcgaattcgatgctaaagatattatttattttaggattgatagaaaaaggaagctttat
gctactactttactaagagctattggtatgagtactgaagaaattataaaattttattat
aattcagtaacttataagtttgtaaaaaataaagggtggtctgttaaatttatacctcag
catattactgctcatcgtttaacaagtgatttagtggatgcagatacaggaaatgtttta
ctgaaagcaggacaaaaaattacaccgcgtttggctcaaaaatattttggtgtaggtctt
aataatattttagtaactcatgaaactttaatcggtaaatatctatctgaagatttaaga
gatcctgcaagtgatgaagttttagctaaaattggtgaaatgattacttctgatatgtta
aaagttattaatgatcttaaaattaaaaatgttaacgtattagtaatcaatcctcaatca
ggttcatatataagaaacaccttgttcgctgataaaaatcaggaccgtgaggcagcatta
tgtgacatttttcgagttttaagaccaggcgaacctgctaatattgaagcagcagaaagc
ctattttataatttattctttgatgcagaaagatatgatctttcagaagttgggcgaata
aaaatgaattctaggttagaattgaatatttctgaagaagttacagttctaacaattgat
gatattaaaaatattgtaaggattttagtcgagcttaaagatggtaaaggtattatagat
gatattgaccatttaggtaatagaagggttagatcggttggtgaattgatagaaaatcaa
tttagaataggtttagtacggatggaaaaatctgtaattgaaaggatgtcagcaggtgat
gttgataccgtaatgcctcatgatttagtaaattctaaaattttagtttcggtagtaaaa
gaattttttagtacctcgcaattatcccaatttatggatcaaacaaatccattatctgag
ataactcataaaagaagactttcagcccttgggcctggaggtcttagtcgagatcgagca
ggttttgaggtacgtgacgtacatcctactcattacggtcgtatttgtcctattgaaaca
ccggaaggtcagaatattggtttaataaactctatggctacttatgctagaataaataaa
catggttttatagagagtccgtatagaagagttaaaaatggatatgtaactgatgaggta
gtatatctttctgccattgaggaaggtaaatacaaaatagggcaagcaaattctaaagtt
gatcaagatggaaaactgcaaggagagttcattaattgccgtgttgagggtggaaatttt
gtaatggtagaaccggatgaggtggatttcattgatgtaacgcctatgcaggtagtatcg
gttgcagcttctcttataccttttttagaaaatgatgatgcgaaccgtgctttgatgggg
tcaaatatgcaaaggcaagctgttcctttaattaaaactgaagcaccttttgtaggtact
ggagttgaaggggtagtggctaaagattctggtgcttcggtgcttgcattacatgatggt
attgttgaacgggtagactcaaatagaattgtgattagaactttagaacaaaaagttgat
gggtctccttctgttgatatttataatttattaaaattccaaaaatcgaatcataatact
tgtataaatcaaaagcctttagttaaggtcggtcattatgttaagaaaaatgatattata
gctgatggtcctagtacagataatggtgaaattgctttaggtagaaatgtacttgtggct
ttcttaccttggaacggttataattttgaagattcaattttaatatctgaacgtatagta
aaagaggatgtgtttacatcaattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacacgcgatataccgaatgtaagtgaagaagcgttgcgt
catcttgatgaagtcgggataatttatgtaggtgcagaagtaaaagctggtgatatttta
gttggaaaagtaacgccaaaaagtgaatctcctattacccctgaagagaaactactacgt
gctatttttggagaaaaagcttttgatgtaaaagattcatcgctgcatgtaccttctgga
gttagtggcactgtagtagaagtaaggatattttctcgtagaggtgtagaaaaagatcag
agagctattgctattgaaaaacaacaaattgaaaaattagcaaaagacagagatgatgag
ttagaaattattgagcattttgtctttagttggcttgaaaagcttttagtaggacatgtt
attattaatggtcctaagcaaataacagcaggacaaactattactactgaaatgctaaaa
ggtttatctaaaggacagctttggcagattacagtagaagatgcaaatgtaatgaatgaa
atagagcagatcaaaattcattatgatgagaaaaaatatgcgctcgataaaagatttact
actaaggtagagaaattgcaaagcggtgatgatttacctcaaggggctttaaaagtagta
aaagtatttattgccactaagcataaattacagcctggggataagatggcaggaagacac
ggaaataaaggtgttatttcacgtatcgtacctgaagaagatatgccatttttagaagat
ggaactgtcgtagatatagtgcttaatcctctaggtctcccatcccgtatgaatatagga
cagattttagaaacccatcttggatgggcatcaataaatttagcaaaaaaaatatctacc
ttagtaaaggaatataaagataatcatatagatattgaggaaattaagaaattcttactt
gagctgtacggcaaggatattaattatatccttgaaggatcagaagaagaaattatctct
ttctgtaataaagtaagtaaaggtgtatattttgcaactcctgtatttgatggtgcaaaa
gttcaagatgttaaagatatgttggaacttgctggccaagatctttcaggacaagtaaaa
ttaattgatggtagaactggtgaatatttcgatcgtttagtaactgtaggacacaaatat
ttgctaaaattacatcacttagtcgataataaaattcactctcgttctataggaccttat
agcttagtaacacagcaaccgcttggaggtaagtctcattttggtgggcaacgttttggc
gaaatggaatgttgggcattacaagcttatggtgcagcttatacgttacaggaaatgtta
actgttaagtcagatgatgtaaacggtaggatcaaaacttatgattctatagtacgtggt
gaaaataattttgaatcaggcattcctgaatcctttaatgttatgataaaagaatttaga
tctttatgtctcaacgtaaagcttgaagtaactccaagtaaataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
All databases (23)

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