KEGG   Rickettsia prowazekii Madrid E: RP447
Entry
RP447             CDS       T00018                                 
Symbol
RP447
Name
(GenBank) DNA HELICASE II (uvrD)
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
rpr  Rickettsia prowazekii Madrid E
Pathway
rpr03420  Nucleotide excision repair
rpr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rpr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RP447 (RP447)
   03430 Mismatch repair
    RP447 (RP447)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpr03400]
    RP447 (RP447)
Enzymes [BR:rpr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RP447 (RP447)
DNA repair and recombination proteins [BR:rpr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RP447 (RP447)
   MMR (mismatch excision repair)
    Other MMR factors
     RP447 (RP447)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 AAA_11 AAA_12 DUF87
Other DBs
NCBI-ProteinID: CAA14904
UniProt: Q9ZD95
Position
546632..548608
AA seq 658 aa
MKDKIQNQNFMHTLNAEQKKAALHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLALPHN
ILAVTFTNKAAKEMSERVHNLINCYGLNIGTFHSMAAKILRDQIENLNLGFNNRFTIISH
DDQLTLVKDIVKLKKDIDAKKYTPKLIHIIISRWKDQGLLPNKLSTSDTNLPLQKIAKLV
YEEYQKNLLISNVLDFGDLLLYNNELFIKNPAVLKYYQEKYRYILIDEYQDTNIAQYLWA
RMLASLYRNICCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLEQNYRSTLPILAAA
SNVINNNKNRHSKTLWTDSSSGEKIKIISCLSDKEEARYIACEIDKLVKEERYNAGNIAI
LVRAGFQTRSFEEAFINSAIPYKIIGGLRFYERMEIRDVLAYIRISLNQNDNLALERIIN
VPKRAIGAASLNKIRSYALERNISNFAAIKEILEIGNIKAKSYESLKDLLTKIDNWYEQF
IIDTPINVVKAILDDSGYLAMLKEEKTEEAFGRIENINEMLRAIAEFNDIHDFIEYSSLV
MENEVLETNYGGSVTIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLDEDGEKGLEEERRI
AYVGITRAKKDLYITHAESRKIFYEIVRSCPSRFINEIPDEITIRTSSMKQYNSFYKF
NT seq 1977 nt   +upstreamnt  +downstreamnt
atgaaagataaaatacaaaatcaaaatttcatgcatacattaaatgcagaacagaaaaaa
gcagcacttcacactgaaggtccccttttattgctagcaggcgccggaactggtaaaaca
aaagttcttacatcaagaatagctaatattattcatcaaaatttagccttgcctcataat
attctcgccgttacttttactaataaagccgcaaaagaaatgtctgaaagggtccataac
ttaattaattgctatggtctgaatataggtactttccactcaatggcagctaagatatta
cgtgaccaaatcgagaatttaaatcttggttttaataatagatttactataattagtcat
gatgatcaattaactttagttaaagatatagtaaagctaaaaaaggatattgatgccaaa
aaatatacacctaagttaatacatattattatttcaagatggaaagatcagggattatta
ccaaataaattatcaacatcagatactaatttaccactacagaaaatagcaaaacttgta
tacgaagaatatcaaaaaaatttacttatttctaatgttttagactttggagatctttta
ctttataacaatgaactttttattaaaaatcctgcagtactaaaatattaccaagaaaaa
tatcgatatattttaatcgatgaatatcaagatactaacattgcgcaatatttatgggca
agaatgctagcaagtttatataggaatatttgttgtgtaggcgatgatgatcaatctatt
tatggttggcgcggagcagaagtcgggaatatactacgttttgaaaaagattttgcaggt
gcaacgattattaaattagaacagaattatagatcaaccttgccaatacttgctgctgct
tccaatgttatcaataataataaaaatcgtcacagtaaaacgctatggacggacagctca
agtggtgaaaagataaaaattatttcttgtttaagtgataaagaagaagcaagatatata
gcatgtgaaatagataagttagttaaagaagaaaggtataatgctggcaatattgcaata
ttagtacgcgcggggtttcaaacaagaagttttgaggaagcttttataaatagtgctata
ccttataaaattataggcggtttacgattctatgaacgtatggaaataagagacgtactt
gcttatatccgtatatctttgaatcaaaatgacaatctagcacttgagcgtattatcaat
gtgccaaaaagagcaataggtgcagctagcctaaataaaattagatcttatgcacttgaa
cgcaatatttctaattttgcagcaattaaagaaatactagaaataggtaatattaaagca
aaatcatatgaatctctaaaagatttacttactaaaattgataattggtatgaacaattt
attatagataccccaataaacgtagttaaagcaatacttgatgattctggttatcttgca
atgctgaaagaagaaaaaactgaagaagcatttggtagaattgaaaatattaatgagatg
cttagagctattgcagaatttaatgatattcatgattttatcgaatattcaagcttagtt
atggaaaatgaagtacttgaaactaattacggtggatctgtgactataatgacactgcac
gcagctaagggactcgaatttgatgtagtatttttacctggatgggaagaaggtgtattt
ccttctcaaagatctctagatgaagatggagaaaaaggcttagaagaagaacgacgtatc
gcttatgttggtattacgagagcaaaaaaagatctttatattactcacgcggaaagcaga
aaaatattttatgaaatagtacgctcttgcccttcaaggttcataaatgaaattcctgat
gaaattacgattagaacatcttctatgaagcaatacaattctttttataagttttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (32)   

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