KEGG   Rhodopseudomonas palustris TIE-1: Rpal_0087Help
Entry
Rpal_0087         CDS       T00722                                 

Definition
formamidopyrimidine-DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
rpt  Rhodopseudomonas palustris TIE-1
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:rpt00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Rpal_0087
Enzymes [BR:rpt01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Rpal_0087
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Rpal_0087
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
96707..97582
Genome map
AA seq 291 aa AA seqDB search
MPELPEVETVRRGLQPAMEGFRIDRAVAHRENLRFPLQKDFAARLTGQTVTGLGRRAKYL
LADLSSGDVLLMHLGMSGSFRVIGADGETTPGEFHYPRSEDRTHDHVVFEMASGARVVFN
DPRRFGFMKVFPRSEIETEPHLKGLGPEPLGNAFDASLLAKACAGKQTSLKAALLDQRVV
AGLGNIYVCEALFRAHLSPKRKASTLANRKEEPTDHAVRLTEAIREVLGEAIKAGGSSLR
DHRQTSGELGYFQHAFKVYDREGKPCPTCGGTVQRFVQNGRSTFWCPKCQK
NT seq 876 nt NT seq  +upstreamnt  +downstreamnt
atgcccgaactccccgaagtcgaaaccgtccgccgcgggctgcagccggcgatggagggc
tttcggatcgaccgcgcggtggcgcaccgggagaacctgcggtttccgctgcagaaggac
ttcgccgcccggctcaccggccagaccgtcaccgggctcggccggcgtgccaaatatctg
ctggcggacctgtcgagcggcgacgtgctgctgatgcatctcgggatgtccggctcgttc
cgggtgatcggggccgatggcgagaccacgccgggcgagtttcactatccgcgcagcgag
gaccgcacccacgatcacgtggtgttcgaaatggcgtccggcgcccgcgtcgtgttcaac
gatccgcgccggttcggcttcatgaaggtgtttccgcgcagcgagatcgaaaccgagccg
cacctgaagggcctcggtcccgagccgctcggcaacgcgttcgacgccagcctgctggcg
aaggcctgcgccggcaagcaaaccagcctcaaggccgcgctgctcgatcagcgcgtggtt
gccgggctcggcaacatctatgtttgcgaggcgctgtttcgcgcgcacctgtcaccaaag
cgcaaagcctcgacgctggccaatcgcaaggaagagccgaccgaccacgcggtgcggctg
accgaggcgatccgcgaggtgctgggcgaagcgatcaaggccggcggctcatcgctccgc
gaccaccgccagaccagcggtgagctcggttacttccagcacgcgttcaaggtgtacgac
cgcgaaggcaagccgtgcccgacctgcggcggcacggtgcaacgcttcgtgcagaacggc
cggtcgacgttctggtgcccgaagtgccagaagtga

DBGET integrated database retrieval system