KEGG   Rhodopseudomonas palustris TIE-1: Rpal_5204
Entry
Rpal_5204         CDS       T00722                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
rpt  Rhodopseudomonas palustris TIE-1
Pathway
rpt03030  DNA replication
rpt03410  Base excision repair
rpt03420  Nucleotide excision repair
rpt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rpt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Rpal_5204
   03410 Base excision repair
    Rpal_5204
   03420 Nucleotide excision repair
    Rpal_5204
   03440 Homologous recombination
    Rpal_5204
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rpt03032]
    Rpal_5204
   03400 DNA repair and recombination proteins [BR:rpt03400]
    Rpal_5204
Enzymes [BR:rpt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Rpal_5204
DNA replication proteins [BR:rpt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Rpal_5204
DNA repair and recombination proteins [BR:rpt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     Rpal_5204
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Rpal_5204
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 HHH_5
Other DBs
NCBI-ProteinID: ACF03692
UniProt: B3QC91
Position
5611612..5614689
AA seq 1025 aa
MPKTTKSAAATPAASSVTPPAPVGVKPPGKGDHIFLVDGSSYIFRAYHALPPLNRKSDGL
QVNAVLGFCNMLWKLLRDMPPENRPTHLAIIFDKSEVTFRNHLYPEYKAHRPPAPEDLIP
QFALIREAVRAFDLPCLEQSGFEADDLIATYVREACEAGATATIVSSDKDLMQLVTDCVV
MYDTMKDRRIGVPEVIEKFGVPPNKVVEVQALAGDSVDNVPGVPGIGIKTAAQLINEYGD
LETLLARAPEIKQPKRREALIENAEKARISRKLVLLDDHVQLEVPLEELAVHEPDARKLV
AFLKAMEFTTLTRRVADYAQIDPSDVEAETALKSAVPPLAKSAPPSGDLFAGQEPSPQPS
PAGGGGSAPASGQGGPLNAGRGRDGRPGVVLSPETLVAARAEAARKIPVDRTAYKTLHSL
DELQGFIARIHDTGIVALEAAATSIDPMQAELIGLALALGPNDACYIPLPHKQSGDGDGL
FAAGLAPDQIGPRDALDALKPILESAGVAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSY
ALDAGRGSHALDALSESNLGHTLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLR
LARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEA
EIRELAGEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKI
LDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGR
KIRRAFVATPGNKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVE
GMPSEIRRRAKAINFGIIYGISAFGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRD
FCRTHGYVTTLFGRKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDAL
AEKKLSAQMLLQVHDELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADN
WDEAH
NT seq 3078 nt   +upstreamnt  +downstreamnt
atgccgaaaacgacaaagtccgccgctgcgacgcctgccgcttcctccgtcacgccccct
gcccccgtcggcgtcaagccgcccggcaagggcgaccacatcttcctggtcgacggctcg
tcgtacatcttccgcgcctatcacgcgctgccgccgctgaaccgcaagtcggacgggctg
caggtcaatgccgtgctcggcttctgcaacatgctgtggaagctgctccgcgacatgccg
ccggagaaccggccgacgcatctcgccatcatcttcgacaagtcggaagtcaccttccgc
aaccatctctaccccgaatacaaggcgcaccggccgccggcaccggaggatctgatcccg
caatttgccctgatccgcgaggcggtgcgggcgttcgacctgccgtgcctggaacagtcc
ggtttcgaggccgacgatctgatcgccacttacgtgcgcgaggcgtgcgaggccggggcc
acggcgacgatcgtgtcgtccgacaaggacctgatgcagctcgtgaccgactgcgtggtg
atgtacgacaccatgaaggaccgccgcatcggcgtgcccgaggtgatcgagaaattcggc
gtgccgcccaataaggtggtcgaagtccaggcgctcgccggcgacagcgtcgacaacgtg
ccgggcgtgccgggcatcggcatcaagaccgccgcgcagctgatcaacgaatatggcgac
ctcgaaaccctgctggcccgcgcacctgagatcaagcagccgaagcggcgcgaggcgctg
atcgagaacgccgagaaggcgcggatctcgcgcaagctggtgctgctcgacgaccatgtg
caactagaggtcccgctggaagagctcgcagtgcacgagcccgacgcgcgaaaactggtg
gcattcctcaaggcgatggaattcaccacgctgacgcggcgcgtcgccgactatgcgcag
atcgatccgtcggatgtcgaggcggagacggcgctgaagtcggccgtgccgccgcttgcg
aagagcgcgcccccgagcggcgacctgtttgcgggccaagagccctcaccccagccctct
cccgcaggcgggggagggagcgcgccggcctcgggccaaggtggtccgctgaatgccggc
cgcggccgcgacggcaggccgggcgtcgtgctgtcgccggaaacgctggtggcggcgcgg
gccgaggccgcccgcaagattccggtcgaccgcactgcctacaagacgctgcacagcctc
gacgaactgcagggcttcatcgcccgcatccacgacaccggaatcgtcgcgcttgaagcg
gccgcgacctcgatcgatccgatgcaggcggagctgatcggccttgccctggcgctcggc
ccgaacgacgcctgctacattccgctgccgcataagcagagcggcgacggtgacggcctg
ttcgccgccggcctcgcgcccgaccagatcggcccccgcgacgcgctcgatgcgctgaag
ccgatcctggaatccgccggcgtcgccaaggtcggcttcgcgatcaaattcgccgcggtg
ctgctggcgcagcacggcctgaccttgcgcaacatcgacgatccgcagctgatgtcctac
gcgctcgacgccggccgcggcagccacgcgctcgatgcgctgagcgaaagcaatctcggc
cacaccctgcacacgctcaccgagctgaccggcaccggcaaaaacaagatcggcttcgat
caggtgccggtcgaccgtgccaccgcctatgcggccgaacgcgccgacgtgagcttgcgg
ctggcccgcgtgctgaagccgcgcctcgtcgcaggcagcatgaccgcggtgtacgagacg
ctggagcgccctcttgtcggcgtgctggcgcggatggagcggcgcggcatctcgatcgac
cggcaggtgctgtcgcggctgtcggcggatttcgcccagaccgcggcgcggatcgaggcc
gagatccgggagctcgccggcgaggacatcaatatcggcagtcccaagcagctcggcgac
atcctgttcggcaagatgggcctgccgggcggcagcaagaccaagaccggcgcgtggtcg
acctctgcgcaggtgctcgacgagctcgccgaacagggccacgaattcccgcgcaagatt
ttggactggcggcaggtcagcaagctgcgctcgacctacaccgacgcgctgccgaattac
gtgcatccgcagacccaccgcgtccacaccacctatgcactcgccgccaccaccaccggt
cggctgtcgtcgaacgagccgaacctgcagaacatcccggtgcgcaccgaggatggccgc
aagatccgccgcgctttcgtggcgacgcccggcaacaagctggtgtcggcggactattcg
cagatcgaactgcgcctcttgtccgaagtcgccgacgtgccggcgctgcgcaaggcgttc
caggacggcatcgacattcacgcgatgacggcgtccgagatgttcggcgtgccggtcgag
ggcatgccgtcggaaattcgccgccgggcgaaagcgatcaatttcggcatcatctacggc
atctcggcattcggcctcgccaaccagctgagcatcccacgcgaggaagccggcgcctac
atcaagcgctacttcgagcgcttcccaggcatccgcgcctatatggacgagacccgcgat
ttctgccggacgcacggctatgtcaccacgctgttcggccgcaaatgccactacccggac
atcaaggcgtccaatccgtcgatccgcgccttcaacgagcgcgccgccatcaacgcaagg
ctgcaaggctccgccgccgacatcatccgccgcgccatggtgcggatggaggacgcactc
gccgagaagaagctctcggcgcagatgctgctgcaggtccacgacgaactgatcttcgaa
gtgccggaggccgaggtggaagcgacgctgccggtggtccgctcggtgatgcaggacgcg
ccgttcccggcggtgatcctcaacgtcccgctgcaggtggatgcgcgggcggcggataac
tgggacgaagcgcattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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