KEGG   Rhodopseudomonas palustris DX-1: Rpdx1_1341
Entry
Rpdx1_1341        CDS       T01381                                 
Name
(GenBank) excinuclease ABC, C subunit
  KO
K03703  excinuclease ABC subunit C
Organism
rpx  Rhodopseudomonas palustris DX-1
Pathway
rpx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rpx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Rpdx1_1341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpx03400]
    Rpdx1_1341
DNA repair and recombination proteins [BR:rpx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Rpdx1_1341
SSDB
Motif
Pfam: UvrC_RNaseH_dom HHH_5 HHH GIY-YIG HHH_2 UVR HHH_3 GIY_YIG_domain
Other DBs
NCBI-ProteinID: ADU42964
UniProt: E6VGC8
Position
complement(1420402..1422501)
AA seq 699 aa
MIHDPAEPGTAAAAPSADAPSPAVAAPAAEASPAVGAQDIDAATAALAVEEDDEARLPEV
EDEPEGDGAGPMAVGRSAIARAVRLAPTSPGVYRMLNEGRDVLYVGKAKNVKKRLASYAR
PTGQVLRIARMIALTVEVEVISTTTETEALLLEANLIKQLRPRFNVQLRDDKSFPYILIT
GDHWAPQILKHRGAQSRPGRYFGPFASAGAVNRTITALQRAFLVRSCTDSFFESRTRPCL
LYQIRRCAGPCTGEVDFPGYSELVREATDFLSGRSRAVKQLLAAEMEKASGELEFETAAL
YRDRLAALSAIQSQQGINPRTVEEADVFAIHQDGGYSCVEVFFFRTGQNWGNRAYFPRAE
KTFTPAEVLGAFVAQFYDDKPPPKLILLSHEIDEAELLADALCVKAGHKVEIMVPKRGEK
KELVTHAQTNAREALGRKLADTATQARLLDSLATTLGLPKAPQRIEVYDNSHIQGTNAVG
AMIVAGPEGFIKNQYRKFNIRSEGLTPGDDYAMMREVLQRRFKRLAALQTDGGDAEPADK
SKDDEVPQWPDLVIIDGGRGQLNAAREALSGIGLTDQVTLLGVAKGPDRDAGRETLFMPD
RDAIKLEPRDPVLYFIQRLRDEAHRFVIGSHRTLRKKDIREAGLQEIPGIGPTRKRALLL
HFGTLKEIERASIADLGKVPGISAESARRIFEFFHARLG
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgattcacgatcccgccgagcccggaacggccgcggccgcaccgtccgccgacgccccc
tctcccgccgtggctgcgcctgccgcggaagcgtcccctgctgtcggggcgcaggacatc
gacgccgccaccgctgcgctggcggtcgaagaggacgacgaggcgcggctgccggaggtc
gaggacgagcccgagggggacggcgccgggccgatggcggtcggccgctcggcgatcgcg
cgcgcggtgcggctggccccgacctcgcccggcgtctaccggatgctgaacgaaggccgc
gacgtgctttacgtcggcaaggccaagaacgtgaagaagcggctggcgtcctacgcccgc
cccacggggcaggtgctgcgaatcgcccgcatgatcgcgctcaccgtcgaggtcgaggtg
atctccaccaccaccgagaccgaggcgctgctgctcgaagccaacctgatcaagcagctc
cggccgcgcttcaacgtccagctccgcgacgacaagtcgttcccctacatcctgatcacc
ggcgaccattgggcgccgcagatcctcaagcatcgcggcgcgcagagccggccaggacgg
tatttcggtccgttcgcctcggccggcgcggtcaaccgcaccatcacggcgctgcagcgt
gcgttcctggtgcgatcctgcaccgattcgttcttcgaaagccgcacccgcccctgcctg
ctctatcaaatccgccgctgcgccgggccgtgcaccggcgaggtcgacttccccggttac
agcgagcttgtgcgcgaggcgaccgacttcctgtcgggccgcagtcgggcggtgaagcag
ttgctcgccgccgagatggagaaggcgtcgggcgagctcgaattcgagactgcggcgctg
taccgcgaccggctggcggcgctgtcggcgatccagtcccagcagggcatcaatccgcgc
accgtcgaagaagccgacgtgttcgcgatccatcaggacggcggctattcctgcgtcgag
gtgttcttcttccgcaccgggcagaactggggcaaccgcgcctacttcccgcgcgccgag
aagaccttcacgccggccgaagtgctcggcgccttcgtggcgcagttctacgacgacaag
ccgccgccgaagctgatcctgctgtcgcatgagatcgacgaggccgagttgctcgccgac
gcgctgtgcgtcaaggccggccacaaggtcgagatcatggtgcccaagcgcggcgagaag
aaggaactggtcacccacgcccagaccaatgcgcgcgaagcgctcggccgcaagctcgcc
gataccgcgacccaggccaggctgctggacagcctcgccaccacgctcggcttgccgaag
gcgccgcagcggatcgaggtctacgacaacagccacatccagggcaccaatgcggtcggc
gcgatgatcgtcgccggcccggagggcttcatcaagaaccagtaccgcaagttcaacatc
agatcagaaggactgacgcccggcgacgactacgcaatgatgcgcgaagtgctgcagcga
cggttcaaacggctggcggcgttgcagaccgatggcggcgatgccgaaccggccgacaag
tccaaagacgacgaggtgccgcaatggccagacctcgtcattatcgacggcggccgcggc
cagctcaacgccgcgcgcgaagcgctgtccggcatcggcctgaccgaccaggtgacgctg
ctcggcgtcgccaagggcccggaccgcgacgccgggcgcgagaccctgttcatgccggac
cgcgacgcgatcaagctcgagccgcgcgacccggtgctgtatttcatccagcggctgcgc
gacgaggctcatcgtttcgtgatcggctcgcaccgcacgctgcgcaagaaggacatccgc
gaggccggactgcaggagatcccaggcatcggcccgacccgcaagcgggcgctgctgctg
catttcggtacgctgaaggaaatcgagcgcgcctcgatcgccgacctcggcaaggttccg
ggcatcagcgccgaaagcgcgcggcgaatcttcgagttcttccatgctcggctgggatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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