KEGG   Rhodopseudomonas palustris DX-1: Rpdx1_2874
Entry
Rpdx1_2874        CDS       T01381                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
rpx  Rhodopseudomonas palustris DX-1
Pathway
rpx02024  Quorum sensing
rpx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rpx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Rpdx1_2874
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Rpdx1_2874
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rpx03019]
    Rpdx1_2874
   03036 Chromosome and associated proteins [BR:rpx03036]
    Rpdx1_2874
Messenger RNA biogenesis [BR:rpx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Rpdx1_2874
Chromosome and associated proteins [BR:rpx03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Rpdx1_2874
SSDB
Motif
Pfam: Hfq
Other DBs
NCBI-ProteinID: ADU44457
UniProt: E6VK87
Position
complement(3064441..3064689)
AA seq 82 aa
MAADRAQNLQDTFLNHVRKTKTPLTIFLVNGVKLQGIVTWFDNFCLLLRRDGHSQLVYKH
AISTIMPGAPIQLFESGEDSPA
NT seq 249 nt   +upstreamnt  +downstreamnt
atggcggcagaccgcgcacaaaaccttcaagacactttcctcaaccacgtacgcaagacg
aagactcccctgacgatcttcctggtcaacggggtgaagttgcagggtattgtcacctgg
ttcgataatttttgccttttgttgcggcgcgacggtcattcgcagctcgtctacaagcac
gcgatctcgacgatcatgccgggggcgccgatccagttgttcgaaagcggcgaggactcg
ccagcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

Download RDF
DBGET integrated database retrieval system