KEGG T01381: Rpdx1

Rhodopseudomonas palustris DX-1: Rpdx1_3926

Entry

Rpdx1_3926 CDS T01381

Definition

pyridoxal-phosphate dependent TrpB-like protein

Orthology

K06001

tryptophan synthase beta chain [EC:4.2.1.20]

Organism

rpx Rhodopseudomonas palustris DX-1

Pathway

rpx00260	Glycine, serine and threonine metabolism
rpx00400	Phenylalanine, tyrosine and tryptophan biosynthesis
rpx01100	Metabolic pathways
rpx01110	Biosynthesis of secondary metabolites
rpx01230	Biosynthesis of amino acids

Module

rpx_M00023

Tryptophan biosynthesis, chorismate => tryptophan

Class

Metabolism; Amino acid metabolism; Glycine, serine and threonine metabolism [PATH:rpx00260]
Metabolism; Amino acid metabolism; Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rpx00400]

SSDB

Motif

Pfam:

PALP TPP_enzyme_M

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(4210602..4211966)

AA seq 454 aa
MSDQIKYVLDEENIPKSWYNLNADFPTPMPPVLHPGTHQPVGPSDLEPLFPMELILQEVA
TERYIEIPEPVRDVFRMWRPAPLIRARRLEQALGTPAKIYFKYEGVSPAGSHKPNTAVPQ
AWYNKQAGIKKLSTETGAGQWGSSLAFAGSLFGLDVLVFQVRVSFDQKPYRRALMETYGA
RCIASPSTETDSGRAILEKNPNSPGSLGIAISEAVEVAAKNPDIKYALGSVLNHVMLHQT
IIGEEAIKQFEMAGDDPDVVIGCAGGGSNFAGLAFPFLGLQLRGGRKRRIIAVEPAACPT
LTRGTYAYDFGDTAHLTPLVKMHTLGSTFMPPGFHAGGLRYHGMSGMVSHAYELGLIEAR
AYQQVGCFEAGVQFARTEGIVPAPESTHAVRCAIDEALRCKEEGKSETILFNLSGHGHFD
MQAYINYFEGKLVDQDYDEADLATALAGLPAVAA

NT seq 1365 nt +upstreamnt +downstreamnt
atgagcgaccagatcaagtatgtactggacgaggagaacatcccgaagtcctggtacaat
ctcaatgccgactttccgacgccgatgccgccggtcctgcatccgggcacgcatcagccg
gtcggcccgagcgatctggagccgctgtttccgatggagttgatcctccaggaggtcgcg
accgagcgctacatcgagattcccgagccggtgcgcgacgtgttccggatgtggcgcccg
gcgccgttgatccgtgcgcgccgcctcgagcaggcgctcggcacgccggccaagatctac
ttcaagtacgaaggcgtttcgccggccggctcgcacaagccgaacaccgcggtgccgcag
gcctggtacaacaagcaggccggcatcaagaagctgtcgaccgagaccggcgccgggcag
tggggctcgtcgctggcgttcgccggctcgctgttcgggctcgacgttctggtcttccag
gtccgcgtgtcgttcgatcagaagccgtatcgccgcgcgctgatggagacctacggcgcg
cgctgcatcgcgtcgccgtcgaccgaaaccgactccggccgcgccattctggagaagaat
ccgaacagccccggttcgctcggcatcgcgatctccgaagcggtcgaagtcgccgccaag
aacccggacatcaagtacgcgctgggttcggtgctcaaccacgtgatgctgcaccagacc
atcatcggcgaagaagcgatcaagcagttcgaaatggcgggcgatgatccggacgtcgtg
atcggctgcgccggcggcggttcgaactttgccggccttgccttcccgttcctcggcctg
cagctccgcggcggtcgcaagcggcgcatcatcgcggtcgagccggcggcgtgcccgacc
ctgacccgtggcacctacgcctacgacttcggcgacaccgcgcatctcaccccgctggtg
aagatgcacacgctcggctcgaccttcatgccgccgggcttccacgccggcggcctgcgc
tatcacggcatgagcgggatggtgtcgcacgcctacgagctcggcctgatcgaggcgcgc
gcctatcagcaggtcggctgcttcgaagccggcgtgcagttcgcccggaccgaaggcatc
gtgccggcgccggaatcgacccatgcggtgcgctgcgcgatcgacgaggcgctgcgctgc
aaggaggagggcaagtcggaaacgatcctgttcaacctctccggccacggccatttcgac
atgcaggcctacatcaactacttcgaaggcaagctggtcgatcaggactacgacgaagcc
gacctcgccaccgcgctggcgggattgccggcggtcgcggcctga

All links

Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RPX (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (26)   

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