KEGG   Rubrobacter radiotolerans: RradSPS_0797
Entry
RradSPS_0797      CDS       T03080                                 
Name
(GenBank) mfd: transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
rrd  Rubrobacter radiotolerans
Pathway
rrd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rrd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RradSPS_0797
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rrd03400]
    RradSPS_0797
Enzymes [BR:rrd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RradSPS_0797
DNA repair and recombination proteins [BR:rrd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      RradSPS_0797
SSDB
Motif
Pfam: UvrB_inter DEAD TRCF Helicase_C CarD_TRCF_RID ResIII Glyco_tran_WecG RecG_dom3_C UB2H
Other DBs
NCBI-ProteinID: AHY46080
UniProt: A0A023X274
Position
850041..853259
AA seq 1072 aa
MNTSDSPGSTVTQTSTRTARRIQAPRRVRAYLALAGNDGRRLLVASDEAAAERYARDASA
YVADGRDVLHLPSRGVAYGDVFEPEVARVGARQRALHALASGEARFIAAGPLALAERTPL
HEPVSFAAGEFVEQEAALARLAELGYERADRVFRPGEFAVRGGIVDVFPSTRRSPVRVEW
WGDEVESVRAVSLATQRVVRELEGVTVYAAREGDLAALAAGREEGELPEEALRGVRTPGL
DRLLLDLSPVAPLDLVPEGVEVWAEDVREPLPEGLDGFVRELYDRREPAADVCFVGGDEE
AEVVSAPPLALQANSLREAARRMSGWVEEGMAVFLACGSSSDAKRTVYAFAEIDRGVREA
ERVDASLPPGLYAVPGTVEEGFTYPEGNVAVVRRDSIFGRRKERPKSRGKTLTSFADLKQ
GDLVVHRIQGVGRFEGLVSKEALGVVRDYMEVTYRGGDTLFVPYEQMDLLHKYVGGGTAL
DKLGGESWARVTDRVRQRVKVLAGELLKLHSARSVLPGHAFPEDTEWERELEESFPYQET
TDQAAAIAAVKADMMKPHPMDRLVCGDVGFGKTEVAVRAAFKATVAGKQTLMLAPTTILV
QQHFRTFSRRLGPFAVRVESLSRFTTAAERRRILADYAKGEIDVLIGTHAVLSAEVNPKD
LGLVVVDEEQRFGVRHKERIKQFKTSVDVLTLTATPIPRTMQMGLAALRDISVIETAPTG
RRSVLTHVGPYDEAMVVRAIKREVARGGQVFFVHNRVETIDETAERLRELVPGVSFVAAH
GQMPERMLEDTMRRFLDREADVLVTTTIVESGLDVATANTLIVERADLMGLSQLYQLRGR
IGRSTEQAYAYLYAPLGATLESQKRLEALMDFTELGSGFAVAMRDLEIRGAGNLLGDEQS
GHIAAVGFEMYLRLLDEAVALAKGEKATSAPEDERPVIVELPLDAYLPPEYVSDEIERVD
LYRRASSARTLVEVEDLAEELRDRFGELPEAATNLIGLSKVRILAREAGASSVGYRSGTL
TVYGVTVAGRTKGAVREATGGTVTGREGKVTVRGSKLGAEELAVAVLSPLAA
NT seq 3219 nt   +upstreamnt  +downstreamnt
gtgaacacttcggacagtccaggctccaccgtaacccagacttccacccggaccgcgagg
cgcatccaggctccgcgccgggttcgcgcatacctcgcccttgccggaaacgacggacga
aggctcctcgtcgcttcggacgaggccgccgccgagcggtacgcgcgcgacgcctcggcc
tacgtcgccgatgggcgggacgtgcttcacctgccttcgcgcggcgtcgcctacggggac
gtcttcgagcccgaggtcgcgcgcgtcggagcgcgtcagcgggcgctgcacgctctggcc
tccggtgaggcgcggttcatcgccgccgggccgctggccctcgccgagcggacgccgctg
cacgagcccgtctccttcgctgcgggcgagttcgtcgagcaggaggcggcgctcgcgcgg
ctcgcggagctaggctacgaacgcgccgaccgggtcttccggcccggcgagttcgccgtc
cggggcggcatcgtggacgtgttcccgtccacgcgcaggtccccggtgcgcgtcgagtgg
tggggagacgaggtggagagcgtccgggccgtctcgctcgcgacgcagagggtcgtgcgc
gagcttgagggcgtcacggtgtacgccgcccgcgagggcgacctcgccgcgctcgccgcc
gggcgcgaagagggcgagcttccggaggaggcgcttcgcggggtcaggacgccgggtctc
gaccggctgctcctcgacctctcgcccgttgcgccgctcgaccttgtgccggagggtgtg
gaggtctgggccgaggacgtccgggagccgcttccggaggggctcgacggctttgtccgg
gagctatacgaccggcgcgagcccgcggcggatgtgtgttttgtcggaggagacgaggag
gctgaagtcgtctccgcgccgccgctcgcgcttcaggcgaactcgctgcgtgaggcggca
cgaaggatgagcggctgggtcgaagaggggatggccgttttcctggcctgcggctcgtcg
agcgacgcgaagcggaccgtgtacgcgtttgcggagatcgaccgtggggtgcgcgaggcc
gagcgtgtggacgcgagcctcccgcccggcctctacgccgtccccgggacggtcgaggag
ggcttcacctacccggaggggaacgtcgccgtcgtgcggcgggactccatcttcggccga
cggaaggagcgtccgaagagccggggaaagacgctcacctcgtttgcggacctgaagcag
ggcgacctcgtggttcaccggatccagggggtcggacgcttcgaggggctcgtctcgaag
gaggcgctcggggtcgtccgggactacatggaggtaacgtaccggggcggcgacacgctc
ttcgttccatacgagcagatggacctgctgcacaagtacgtcggcggcgggacggctctg
gacaagctcggcggcgagagctgggctcgtgtaaccgaccgcgtccgccagcgggtgaag
gtgctcgccggggagcttctgaagctccactcggcgcggagcgttcttccggggcacgct
ttccccgaggacaccgagtgggaacgggagcttgaggagagcttcccgtatcaggagacg
accgatcaggctgccgcgatcgccgcggtgaaggccgacatgatgaagccgcacccgatg
gaccggctcgtgtgcggggacgtcgggttcggaaagaccgaggtggcggtgagagccgcg
ttcaaggccactgttgccgggaagcagactctgatgctcgcgccgacgacgatcctcgtc
cagcagcacttccggacgttctcaaggcggctcggaccgttcgccgtgcgcgtcgagagc
ctctcgcgcttcacgacggccgccgagcggcggaggatcctcgccgattacgcgaagggt
gagatagacgtccttatcgggacgcacgccgtgctcagtgcggaggtaaacccgaaggac
ctcgggctcgtcgtcgtggacgaggagcagcgcttcggtgtgaggcacaaggagcgcata
aagcagttcaagacgagcgtggacgttctgacgctgacggcgacccctataccgcgcacg
atgcagatgggcctcgccgccctcagggacataagcgtgatcgagaccgcccccacgggc
aggcgcagcgtccttacgcacgtcggaccgtacgacgaggcgatggtcgtccgggcgata
aagcgcgaggtcgcgcgcggcgggcaggtcttctttgtccacaaccgggtcgagacgatc
gacgagaccgccgagcgactcagggagctggtcccgggggtgagcttcgtcgccgcccac
gggcagatgccggagcggatgcttgaggacacgatgcggcgttttctcgaccgggaggcc
gacgtgctcgttacgacgacgatcgtcgagagcggactcgacgtcgcgacggcgaacacc
ctgatcgtcgagcgagccgaccttatggggctctcgcagctctatcagctccgggggcgc
atcgggcgctcgacggagcaggcctacgcctacctctacgcgcccctcggggcgacgctt
gagtcccagaagcgtcttgaggcgctgatggacttcacggagctcggtagcggcttcgcc
gttgcgatgcgggaccttgagatccggggcgccgggaaccttctcggggacgagcagtcc
gggcacatcgcggcggtcggcttcgagatgtacctcaggctgctcgacgaggcggtcgcg
ctcgccaagggcgagaaggccacaagcgcgcccgaggacgagcggcccgtgatcgtcgag
ctcccgctcgacgcgtacctcccgccggagtacgtctccgacgagatagagcgcgtcgac
ctctaccgccgggcgtcgagcgcccggacgctcgtagaggtcgaggacctcgcagaggag
ctccgggaccgcttcggggagcttccggaggccgcaacgaacctgatcggcctctcgaag
gtcaggatactcgcccgggaggcgggggcgagcagcgtcggctaccgctccgggacgctc
acggtctacggcgttaccgtcgccggccggacgaagggagcggtccgggaggcgacgggc
gggaccgttacgggccgcgagggaaaggtaacggtgcgcggctcgaagctcggggccgag
gagctcgcggtcgcggtgctctcgccgctcgccgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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