KEGG   Roseiflexus sp. RS-1: RoseRS_1946Help
Entry
RoseRS_1946       CDS       T00542                                 

Definition
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase (EC:4.2.99.18 3.2.2.23)
  KO
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
rrs  Roseiflexus sp. RS-1
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:rrs00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    RoseRS_1946
Enzymes [BR:rrs01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     RoseRS_1946
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     RoseRS_1946
DNA repair and recombination proteins [BR:rrs03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     RoseRS_1946
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
Position
complement(2410424..2411245)
Genome map
AA seq 273 aa AA seqDB search
MPELPEVQLAADSLGVQIVGARIVRVERLDWTRMVETPSPDEFITLLAGRQVHGWGRRAK
WILLFLDGGWTLALHLRMSGSLTVQPADAPPDKHTHLVLRLDDGRQVFFRDPRKFGRARL
LDADGRAALDAAHGDEPLSNAFTVERLAELLRGRKRAIKPLLLDQAVIAGIGNIYADEAL
WRARIHPLRPASDLSADEVAALHDGIRAALRQALTNGGSTLRDYRNSYGTRGTNQDHFNA
YDREGQPCPRCGATIIKTVVAQRGTHYCPECQR
NT seq 822 nt NT seq  +upstreamnt  +downstreamnt
atgcccgagttacccgaagttcaacttgctgccgatagcctgggagtgcagatcgtcggt
gcgcggatcgtgcgtgtggaacggctcgactggacccgcatggtcgagaccccctcgccc
gatgagttcatcacgctgctcgccggtcgtcaggtgcatgggtgggggcgtcgcgccaag
tggattctgctctttcttgatggcggctggacgctggcgttgcacctgcgcatgtccggc
agtctgacggtccaacctgcggacgcacctcccgataagcacacgcacctggtgctccgc
ctcgatgatggtcgccaggttttcttccgcgacccgcgcaagttcgggcgtgcacgattg
ctggatgcggatggtcgggcggcgctcgatgcggcgcacggcgatgagccgctatccaac
gcattcaccgtcgagcgcctggcggagctgctgcgcgggcggaaacgggcgatcaagccg
ctgttgctggaccaggcggtgattgcgggaattggcaacatttacgccgatgaagcgctg
tggcgcgcccgcatccatccattgcgcccggcatccgacctgagcgccgacgaagttgcg
gcgctccacgatggcattcgcgcggcgctgcggcaggcgctgaccaacggcggcagcacg
ttgcgcgactaccgtaactcatacggaacgcgcggcacgaaccaggatcacttcaacgcc
tatgaccgtgagggacaaccgtgtccgcgctgcggcgcaacgatcatcaaaacggtcgtc
gcgcagcgcggaacgcactattgcccggaatgtcagcggtga

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