KEGG   Ralstonia solanacearum CFBP2957: RCFBP_20893
Entry
RCFBP_20893       CDS       T01272                                 
Name
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rsc  Ralstonia solanacearum CFBP2957
Pathway
rsc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rsc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RCFBP_20893
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rsc03400]
    RCFBP_20893
Enzymes [BR:rsc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RCFBP_20893
DNA repair and recombination proteins [BR:rsc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RCFBP_20893
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: CBJ44073
Position
2833756..2836368
AA seq 870 aa
MPGPLDAYRRQRDFSQTREPGGKRRATGRRGNGTLRYVIQKHDATHLHYDFRLELDGTLK
SWAIPKGPSLDPADKRLAVHVEDHPLDYADFEGHIPEGQYGAGDVIVWDRGTWRPHGDAR
AAYRAGKLKFDLDGEKLHGAWTLVRTRLPGSGRHPKEQWLLIKERDAQVRPSGEYDITQA
LPASVISGREVEGDPPAPQPASQMPAPTTPAADAVRPPAGAVPAPLPAALEPQLATLVGT
PPTSGTWDYEAKFDGYRILARIDGDRVQLFSRNGHDWTARLPRQARALPALGLRNAWLDG
EAVVMNAAGVPDFQALQNAFETAHLERIRYVLFDLPYCNGMDLRGVPLRERRALLERIIG
AASDALDHKAIAFSNRLDAPPGPLLASACRLSMEGIIGKRADAPYHAGRSRAWIKLKCGR
RQAFVIGGYSAPKGSRSSLGALLLGVYDDDGALRYAGRVGTGFNQASLRALHAELRGLRT
DRPPFADPPAGAGARDVRWVRPERVAEVAFAQWTREGIVRQAVFQGLRDDKPARGIVRES
ANRASAGSRPNGPDPDDPASAAQPARRTRPGAERIAGVDITHPDRVIETASGTTKADLAR
YYAAIADWILPHLRNRPVALLRAPDGIDGEHFFQKHIAAPQIPGITRLDPSLDPGHASLL
TIDSVEALIGAVQMGAVEFHTWNARADRIEQPDRIVFDIDPDPALPFARVIEATQLTLAL
LDELGLRAFLKTSGGHGLHVVVPLARRASAGWDTLKAFAQAVTQHLARTIPARFAARMGP
QNRIGKTFVDYLRNHRGASTVAAGSVRARPGLPVSVPIARDELAGLHSAAQWNLRTLPDR
LATLKADPWADYARTRQSVTADMRRRIGLG
NT seq 2613 nt   +upstreamnt  +downstreamnt
atgcccggaccgctcgacgcctaccgccgccagcgcgatttctcgcagacccgcgaaccc
ggcggcaagcgccgcgccaccggccggcgcggcaacggcaccctgcgctacgtgatccag
aagcacgacgccacgcacttgcactacgacttccgccttgagctggacggcacgctcaag
agctgggccatccccaagggcccgagcctggacccggccgacaagcgcctcgccgtgcat
gtggaagaccatccgctcgactacgcggacttcgagggccatatccccgagggccagtac
ggcgccggcgatgtgatcgtctgggaccggggcacttggcgcccgcacggcgacgcacgc
gccgcctaccgcgccggcaagctgaagttcgacctcgacggcgagaagctgcacggcgcc
tggaccctggtgcgcacgcgcctgcccggcagcggccggcacccgaaggagcaatggctg
ctgatcaaggagcgcgacgctcaggtccggccatccggcgaatacgacatcacgcaggcg
ctgccggccagcgtcatcagcggcagggaggtcgaaggcgacccgcccgcgcctcaaccg
gcatcgcagatgcccgcgccgaccacgccggccgccgacgccgtgcggccgcctgccggc
gccgtccccgcgccgctgcccgccgcgctggagccgcagctcgccacgctggtcggcacc
ccgcccacctcgggcacgtgggactacgaagccaagttcgacggctaccgcatcctcgcg
cgcatcgacggcgaccgcgtgcaactgttcagccgcaacgggcacgactggaccgcccgc
ctgccacgccaggcacgcgcgctgcccgcgctggggctgcgcaacgcctggctggacggc
gaggcggtggtgatgaacgcagccggcgtgccggatttccaggcgctgcagaacgctttc
gagaccgcgcacctggagcgcatccgctacgtcctgttcgacctgccgtactgcaacggc
atggacctgcgcggcgtgccgctgcgcgagcggcgcgcgctgctggagcgcatcatcggg
gcggcgtccgatgcgctcgaccacaaggccatcgcgttctccaaccggctggatgcgccg
cccggcccgttgctggcctcggcctgccgcctgtcgatggagggcatcatcggcaagcgc
gccgacgcgccctaccacgctggacgcagccgggcctggatcaagctcaagtgcggccgg
cgccaggcattcgtcatcggcggctacagtgcgcccaagggcagccgcagcagcttgggc
gcactgctgctgggcgtgtatgacgatgacggtgcgctgcgctacgccggacgggtcggc
accggattcaaccaggccagcctgcgcgcgctgcacgcagaactgcgcggactgcgcacg
gaccgcccgcccttcgccgacccgcccgccggcgccggcgcgcgcgacgtgcggtgggtg
cggcccgagcgcgtggccgaagtcgccttcgcccaatggacgcgcgaaggcatcgtgcgg
caggccgtcttccagggcctgcgcgatgacaaacccgcgcgcggcatcgtgcgggagagc
gcgaaccgcgccagcgccgggtcccgcccgaacggccccgacccggacgatcccgcatcc
gcagcgcagcccgcgcgccggacgcgcccgggtgccgagcgcatcgccggtgtcgacatc
acgcatccggaccgcgtcatcgaaacagcgagcggcaccaccaaggccgacctcgcgcgc
tactacgccgccatcgcggactggatcctgccgcacctgcgcaaccggccggtggccctg
ctgcgcgcgccggacggcatcgacggcgagcacttcttccagaagcacatcgccgcgccg
cagatccccggcatcacccgactcgacccctcgctcgatcccgggcatgcgtcgctgctg
acgatcgattcggtggaggcgctgatcggcgcggtgcagatgggcgcggtggaattccac
acctggaatgcgcgggccgatcgcatcgagcagcccgaccgcatcgttttcgacatcgac
cccgaccccgcgctgccgttcgcgcgcgtgatcgaggccacgcagttgacgctggcgctg
ctcgacgagctgggcctgcgcgccttcctgaagaccagcggcggccacggcctgcacgtg
gtggtgccgctcgcgcggcgcgcgtcggccggctgggacacgctcaaagccttcgcgcag
gccgtgacgcaacacctggcccgcaccattccggcccgcttcgccgccaggatggggccg
cagaaccgcatcggcaaaacgttcgtcgactacctgcgcaaccaccgcggcgccagcacg
gtagcggcaggctcggtgcgggcgcggcccggcctgccggtctccgtaccgatcgcgcgc
gatgagctggcggggctgcattcggccgcgcaatggaacctgcgcacactgccggatcgc
ctcgccaccctgaaggcagacccctgggccgactacgcccgcacccggcaatcggtgacg
gccgacatgcggcgccgcatcggtctcggctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (35)   

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